Query= MSMg01no522_b17.b1 MSMg01no522_b17.b1 CHROMAT_FILE:
MSMg01no522_b17.b1 PHD_FILE: MSMg01no522_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:37 2005
(652 letters)
>mm_chr1_183314248_183315301
Length = 1054
Score = 1000 bits (517), Expect = 0.0
Identities = 541/549 (98%), Gaps = 2/549 (0%)
Strand = Plus / Minus
Query: 5 gaattcttttgaacttatatttgtaataggatgagcatgaaagtgaagagctggctggag 64
||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 549 gaattcttttgaacttagatttgcaataggatgggcatgaaagtgaagagctggctggag 490
Query: 65 tcaaaggaggaagtgcagtctacaaaccctgctgggacagtcaccataagacctgtgctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 489 tcaaaggaggaagtgcagtctacaaaccctgctgggacagtcaccataagatctgtgctg 430
Query: 125 ggctagagagttctctagcaaaacccacatcttcaacccacagaggaggacctcactca- 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggctagagagttctctagcaaaacccacatcttcaacccacagaggaggacctcactcag 370
Query: 184 ggggggatttctgtgggcaca-cccccccatgtctaaataaagtcaagtagaccttcagc 242
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 369 ggggggatttctgtgggcacaccccccccatgtctaaataaagtcaggtagaccttcagc 310
Query: 243 aacatttcaaagcttcccacctcagaggtcagagtcaattaaccactggctccatcacat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aacatttcaaagcttcccacctcagaggtcagagtcaattaaccactggctccatcacat 250
Query: 303 acccagtgaactacactttgtgctagaaaattgggatacactatagtatttgtttccctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 acccagtgaactacactttgtgctagaaaattgggatacactatagtatttgtttccctg 190
Query: 363 ctgctgtaatcaatcactgtgaatttagtgtctgaaagcaacacagactgatcctacagg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 189 ctgctgtaatcaatcactgtgaatttagtgtctgaaagcaacacagactgatcctgcagg 130
Query: 423 tccagatgccagaagtccaaaatgggtatgttcttttgaggggcttcagaagaaagcccg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tccagatgccagaagtccaaaatgggtatgttcttttgaggggcttcagaagaaagcccg 70
Query: 483 tttccttgtcctttggagatcttaggggctgcctgtttcccttgacttgtggtcctcaac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tttccttgtcctttggagatcttaggggctgcctgtttcccttgacttgtggtcctcaac 10
Query: 543 aaacaacct 551
|||||||||
Sbjct: 9 aaacaacct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1054
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1044
Effective search space: 670248
Effective search space used: 670248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_b17.g1 MSMg01no522_b17.g1 CHROMAT_FILE:
MSMg01no522_b17.g1 PHD_FILE: MSMg01no522_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:37 2005
(589 letters)
>mm_chr1_183146795_183147779
Length = 985
Score = 924 bits (478), Expect = 0.0
Identities = 562/607 (92%), Gaps = 29/607 (4%)
Strand = Plus / Plus
Query: 4 agggctgggaagaactcagaggccaggtcccacaccacgctgtgctgcatagagaaggaa 63
|||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 204 agggctgggaaggactaagaggccaggtcccac-----gctgtgctgcatagagaaggaa 258
Query: 64 cgttgttacaagccccatgtacagagctcttctcggg-aaatgggaaggcacacacatgt 122
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 259 cgttgttacaagccccatgtacagagctcttctcggggaaatgggaaggcacacacatgt 318
Query: 123 gcttacatttctggtaggacagacgggtgggcagtggctgtctgtgaagggactgagtgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcttacatttctggtaggacagacgggtgggcagtggctgtctgtgaagggactgagtgg 378
Query: 183 agcttccctcactttaggttttctaactgtcgatacatttttaaatgtcaacagggttta 242
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 agcttccctcactttaggttttctaactgtccatacatttttaaatgtcaacagggttta 438
Query: 243 tttgggctataaagaaaatagatacattgatcctttttttttttttattaatgttatgat 302
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 439 tttgggctataaagaaaatagatacattgaccctttttttttttgtattaatgttatgat 498
Query: 303 ttaaaaacactagtgctgggggctggagaaatggctcagtggttaagagtactgactgct 362
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 499 ttaaaaacactagtgctgggggctggagagatggctcagtggttaagagcactgactgct 558
Query: 363 cttccaaaggtcctgagttcaaatctcagcaaccatatggtggctcacaaccatccataa 422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 559 cttccaaaggtcctgagttcaaatctcagcaaccacatggtggctcacaaccatccataa 618
Query: 423 tgagatctgatgccccttcctggggtgtctgaagacagctacagtgtacttaaatataat 482
||||||||||||||| || |||| ||||||||||||| |||||||||||||| |||||||
Sbjct: 619 tgagatctgatgcccttttctggtgtgtctgaagacaactacagtgtacttagatataat 678
Query: 483 aaataaataaataaat--------------------ctttaaggaaaaaaaaaaaaccca 522
|||||||||||||||| |||||||||||||||||| |||
Sbjct: 679 aaataaataaataaataaataaataaataaataaatctttaaggaaaaaaaaaa---cca 735
Query: 523 aaacactagtatttctaanagaacactcaaaaccaatcaatctgaggtattaaccctaat 582
|||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 736 aaacactagtgtttctaaaagaacactcaaaaccaatcaatctgagatattaaccctaat 795
Query: 583 aaaaaca 589
|||||||
Sbjct: 796 aaaaaca 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 985
Length adjustment: 10
Effective length of query: 579
Effective length of database: 975
Effective search space: 564525
Effective search space used: 564525
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
