Query= MSMg01no522_b22.b1 MSMg01no522_b22.b1 CHROMAT_FILE:
MSMg01no522_b22.b1 PHD_FILE: MSMg01no522_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:38 2005
(534 letters)
>mm_chr1_99722559_99723492
Length = 934
Score = 830 bits (429), Expect = 0.0
Identities = 461/487 (94%), Gaps = 24/487 (4%)
Strand = Plus / Minus
Query: 48 gactgtaacttctggctaaactcttaactgttgcacattacagtttgctatacccagata 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 gactgtaacttctggctaaactcttaactgttgcacattacagtttgctatacccagata 875
Query: 108 cctacatgcttcttgggaatggctcaaagcccagactcatttgaagtcaataattattgc 167
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 874 cctacatgcttcttgggaatggctcaaagcccagactcatttgaagtcaatgattattgc 815
Query: 168 agcccctgcagtagcttctatagcttcatcggatctctttctcaatggtgtattaggcct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 agcccctgcagtagcttctatagcttcatcggatctctttctcaatggtgtattaggcct 755
Query: 228 gatatctatccagctcctcttagcggctcaggaagttgataagctatattcattaccaat 287
|||||||||||||||||||| ||||||||||||||||
Sbjct: 754 gatatctatccagctcctct------------------------tatattcattaccaat 719
Query: 288 aaaatgatatatattgcacttataccttgctgagatccatataaaagaacacaaagggac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aaaatgatatatattgcacttataccttgctgagatccatataaaagaacacaaagggac 659
Query: 348 tgttgatttttgtctttgtcagtctagaattaatgtctaacactacatagagtactaaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tgttgatttttgtctttgtcagtctagaattaatgtctaacactacatagagtactaaaa 599
Query: 408 cttcacaatacataagagtgattcagaaactaaaagatataatgaaccaaatacttatta 467
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cttcacaatacataaaagtgattcagaaactaaaagatataatgaaccaaatacttatta 539
Query: 468 aacaccttctttgtgacccacgtttaaatctaacaatattatgaagcagattagaccaca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aacaccttctttgtgacccacgtttaaatctaacaatattatgaagcagattagaccaca 479
Query: 528 gctttcc 534
|||||||
Sbjct: 478 gctttcc 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_b22.g1 MSMg01no522_b22.g1 CHROMAT_FILE:
MSMg01no522_b22.g1 PHD_FILE: MSMg01no522_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:39 2005
(589 letters)
>mm_chr1_99585583_99586571
Length = 989
Score = 1125 bits (582), Expect = 0.0
Identities = 588/590 (99%), Gaps = 1/590 (0%)
Strand = Plus / Plus
Query: 1 cagagaatccatttgcaagtaagtcacgtaaacttttactagataacagtggcatacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cagagaatccatttgcaagtaagtcacgtaaacttttactagataacagtggcatacaga 259
Query: 61 aaggtaagctcaactacagagaaccaaacacacgtggacagaggagttgttcatattttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaggtaagctcaactacagagaaccaaacacacgtggacagaggagttgttcatattttc 319
Query: 121 ctttgtcttgaagtcttaataatgctatggttggttcccctatgtagtttcacagaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctttgtcttgaagtcttaataatgctatggttggttcccctatgtagtttcacagaaaat 379
Query: 181 aagctttaaaaaaa-ttaaatatttcattactgtgtctgtttcccttgggtttccataac 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagctttaaaaaaaattaaatatttcattactgtgtctgtttcccttgggtttccataac 439
Query: 240 gaaataggagagtcgcttgtttaaacaacagcaattcattttctcgtgcttctgggaata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaaataggagagtcgcttgtttaaacaacagcaattcattttctcgtgcttctgggaata 499
Query: 300 gaaattccaagctcaaggttacttctgaggtttctgtcctaacttcaaaacgggttcagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaaattccaagctcaaggttacttctgaggtttctgtcctaacttcaaaacgggttcagt 559
Query: 360 ctagctatgttcacgtggggttgttccttaatttgcgtgtgattcctagtttaatctctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctagctatgttcacgtggggttgttccttaatttgcgtgtgattcctagtttaatctctt 619
Query: 420 ccacagaaactcgtcatgcaatgagggctcttctgtatacctgcattgcacataggttat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccacagaaactcgtcatgcaatgagggctcttctgtatacctgcattgcacataggttat 679
Query: 480 cttctctctagatacagttatattccaagatacggggagagggtcatgatgtcagcttgt 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 680 cttctctctagatacagttatattccaagatacggggagacggtcatgatgtcagcttgt 739
Query: 540 atataggagagatggagatgacttataacaactccatatccttaacctga 589
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atataggagagatggagatgacttataacaactccatatccttaacctga 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
