BAC Information

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BAC

Clone NameMSMg01-522D20
Chromosome1 (Build37)
Map Location 99,469,663 - 99,470,114
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
Downstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522D20.T7 (MSMg01no522_d20.b1)MSMg01-522D20.TJ (MSMg01no522_d20.g1)
ACCAG592846AG592847
length731892
length of high quality
(start - end)		456 (50 - 505)---
definitionCHROMAT_FILE: MSMg01no522_d20.b1 PHD_FILE: MSMg01no522_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:48 2005CHROMAT_FILE: MSMg01no522_d20.g1 PHD_FILE: MSMg01no522_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCCTCTGGAAGGTTCAGATTGCTGTGTCAACGTCCACTAT
CCTGAAATATCTTCTAGAGAGAACACATGCAGGTACATCTCAAGCCATTT
TTGAGCTTTCACATTCCAACTGAGTGTTGCCCATGCAAAAGGTCGGAAAT
TGAGTCTGAAAATATATTATTATTCTCTTGAAAATTAAGCATCAGTAAAC
TCTATACTGTATATGACTGAATGTGCATCCATCCCCATTGTGGAAATCCT
GTGTGTCTAACTATAACCTGGGTCTCATTTTGGTTACTATGATTGTCAGA
GGATATTTGTGTCTGAATCTAAAGCCAAGGATTAGCTTGTATGCTTGGTT
CTGTCTCTCTTCCAGAATTAGAGAANAGGAAGCCAGCCTGTGTCATATAG
AACATGCAGCAACGTTCCCATGGAAAAATCACCAAGTAACAAGTTTGGGA
GCGATGTTTTATGGAGAAGTTATATATCAGAAAGGCTTGATTTTTTAACT
CTAATTAACCCAAAGATAAAGATCTTTAATGGACTCTTAAGGATAATGGT
ACCTTTTATTTTTTAGAGGGGCAAGTGGTTACCTCTGAAAAGTAAACCCC
CCTGGAAAACCAATGGCAAAAAAAAGGGAAATTATTTTTTTTAAAAAACC
CTTTCCCCTCCAAATTTTTTGGGAGGGGAAG

CCTTTCCCTTCCCCTTCCCTTTTTCCATTTGTATCCTCATACTATCCTCA
CACTTATAGCCCCCACCCCAACACTACCTTATTGCATTCCCCACAAAAAA
GGGGGTNNTGNNNNTTTTNNNNCGGCGAAAATGGACATAAAGGGGGGGTA
AAGGGCCCCTGGGGGGGGGGGCCCCGCCCCCCGGGGCCCCTTTTTCCCCA
AAAAATTTTTTGGGGGGGGGGAAACCCCCTTTTTTAAAAAAAAGGGGATC
TCCCCGCCCGGAAAAAAAAATATTTTTTTGGGTGTTAACAACCCCCCTCC
GGAAAAACCCCCCCCCCCTTTTTTTTTTTTTATAAAAAAAGAGGGGGGGG
GGAAAATAGGAGAAAAAAATTTTTTGGGGGGGGGGGGGAGAAGACACCCA
CCCCCCCCCCCTCTTCTGGGGGGGAGAGGGAGGTGCTCCCTTTTTTTTTA
AAAAAAAAAAAAGGGGGGGGGGGGGGGGGGAAAAAAAAAACAACAACCCC
CCCCCCCCCCCCCCCCCCCCTTTCTNTTTTTGTTTTTTTGTTTTTGGNGG
GTGGGGGGGGGGGGGGAGGGAAAAAAAAAAAAAATATAAAAAAAAATTTC
TTTTCTTCTTCCTCCCCCCCCCCCCCCCCCATCAACATAGAGGGGGGGGG
GGGGGGGGGGTGGGGGGGGAGGAGCGCCCCCCCCCCCCCCCCCCTTTTTT
TTTTGTTTTTTATTAAATAAAAAAAAGAAGAGAGAGAGAAGGGGGGGGGG
GGTTTTGTTGTTTTCTTTTTCTTTCTTTCCCCCCCGCTCCCGCCGCCGCG
AGCGGCTCGAGAAAAAAAAATAAAAAAAAAAGAATACCGGAAGTGTTTAT
TCTTTTCCTTCAGTCGAATAAATTAAGAGAAGCAGCGCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_d20.b1 MSMg01no522_d20.b1 CHROMAT_FILE:
MSMg01no522_d20.b1 PHD_FILE: MSMg01no522_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:48 2005
         (456 letters)



>mm_chr1_99469460_99470314
          Length = 855

 Score =  801 bits (414), Expect = 0.0
 Identities = 443/453 (97%), Gaps = 1/453 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgcctctggaaggttcagattgctgtgtcaacgtccactatcctgaaatatct 63
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 655 ggaattctgcctctggaaggttcagattgctgtgtcaaagtccactatcctgaaatatct 596

                                                                       
Query: 64  tctagagagaacacatgcaggtacatctcaagccatttttgagctttcacattccaactg 123
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 595 tctagagagaacacatgcaggtacatctcaagccatttttgagctctcacattccaactg 536

                                                                       
Query: 124 agtgttgcccatgcaaaaggtcggaaattgagtctgaaaatatattattattctcttgaa 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agtgttgcccatgcaaaaggtgggaaattgagtctgaaaatatattattattctcttgaa 476

                                                                       
Query: 184 aattaagcatcagtaaactctatactgtatatgactgaatgtgcatccatccccattgtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aattaagcatcagtaaactctatactgtatatgactgaatgtgcatccatccccattgtg 416

                                                                       
Query: 244 gaaatcctgtgtgtctaactataacctgggtctcattttggttactatgattgtcagagg 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaaatcctgtgtgtctaacgataacctgggtctcattttggttactatgattgtcagagg 356

                                                                       
Query: 304 atatttgtgtctgaatctaaagccaaggattagcttgtatgcttggttctgtctctcttc 363
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 355 atatttgtgtctgaatctaaaaccaaggattagcttgtatgcttggttccgtctctcttc 296

                                                                       
Query: 364 cagaattagagaanaggaagccagcctgtgtcatatagaacatgcagcaacgttcccatg 423
           | ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 295 cggaattagagaaaaggaagccagcctgtgtcatatagaacatgcagcaacgtgcccatg 236

                                            
Query: 424 gaaaaatcaccaagtaacaagtttgggagcgat 456
           ||||||||||||||||||||| |||||||||||
Sbjct: 235 gaaaaatcaccaagtaacaag-ttgggagcgat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 855
Length adjustment: 10
Effective length of query: 446
Effective length of database: 845
Effective search space:   376870
Effective search space used:   376870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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