Query= MSMg01no522_e22.b1 MSMg01no522_e22.b1 CHROMAT_FILE:
MSMg01no522_e22.b1 PHD_FILE: MSMg01no522_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:53 2005
(577 letters)
>mm_chr1_113791701_113792680
Length = 980
Score = 783 bits (405), Expect = 0.0
Identities = 464/485 (95%), Gaps = 9/485 (1%)
Strand = Plus / Minus
Query: 5 gaattcattaatggctccatttatttcacagttgagaaaaatatagctgacagaagttaa 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 686 gaattcattaatggctccatttatttcacggttgagaaaaatatagctgacagaagttaa 627
Query: 65 gaccacaaaatgtcatgatggtca---tttttttcatcaagctttatgcttgcattgttc 121
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 626 gaccacaaaatgtcatgatggtcattttttttttcatcaagctttatgcttgcattgttc 567
Query: 122 aagcacctatg-tttttgttattttactgtaagattttacatatatatgacctaaattat 180
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aagcacctatgttttttgttactttactgtaagattttacatatatatgacctaaattat 507
Query: 181 tttagtagggttctagatcatgtgcacagcggatattgaaatgaaaggaaatcatg-tct 239
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 506 tttagtaggattctagatcatgtgcacagcagatattgaaatgaaaggaaatcatgttc- 448
Query: 240 agctgttattttttcaggaagtgtcaaatgaatgaaaactccataagaagtaagtttg-g 298
|||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||| |
Sbjct: 447 agctgtta-tttttcaggaagtgtcaaatgaaggaaaaatctgtaagaagtaagtttgtg 389
Query: 299 gatgagatataatgattcaatcaatatcctgtaagaataaaaagaaaaacttgggacaac 358
| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 388 g-tgggatataatgattcaatcaacatcctgtaagaataaaaagaaaaacttgggacaac 330
Query: 359 attattgttttcttaatatgatctccaaccacttttataacttttttggatcttaatttt 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 329 attattgttttcttaatatgatcaccaaccacttttataacttttttggatcttaatttt 270
Query: 419 tctcttgttgtagccatcatatctccctgaattattttattcttattctttccaagtgct 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tctcttgatgtagccatcatatctccctgaattattttattcttattctttccaagtgct 210
Query: 479 atctt 483
|||||
Sbjct: 209 atctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 980
Length adjustment: 10
Effective length of query: 567
Effective length of database: 970
Effective search space: 549990
Effective search space used: 549990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_e22.g1 MSMg01no522_e22.g1 CHROMAT_FILE:
MSMg01no522_e22.g1 PHD_FILE: MSMg01no522_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:53 2005
(640 letters)
>mm_chr1_113745824_113746862
Length = 1039
Score = 1214 bits (628), Expect = 0.0
Identities = 637/640 (99%), Gaps = 1/640 (0%)
Strand = Plus / Plus
Query: 1 caaacttttactacatctcttagacatttttcctaataaaagaaactgcaaaatgtgaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 caaacttttactacatctcttagacatttttcctaataaaagaaactgcaaa-tgtgaaa 259
Query: 61 tttcaatttttagaaattattgctgttgatacttgacatgtacctccaaaatatgaatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttcaatttttagaaattattgctgttgatacttgacatgtacctccaaaatatgaatgt 319
Query: 121 gtgtgaatgtgtttgcttatgcataaaacatcagggtatgtatgtagcatatgtacatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgtgaatgtgtttgcttatgcataaaacatcagggtatgtatgtagcatatgtacatat 379
Query: 181 gaatacgaacattaggttgattacctttaaattactaattgatgtaattacactcattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaatacgaacattaggttgattacctttaaattactaattgatgtaattacactcattta 439
Query: 241 atataattcaaaataacaggtactcattttttacaaataaaatagtatttataataaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atataattcaaaataacaggtactcattttttacaaataaaatagtatttataataaatt 499
Query: 301 cataaaaattatactaaaaatgtttttatccctagaagttttatgagctttgatgtttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cataaaaattatactaaaaatgtttttatccctagaagttttatgagctttgatgtttaa 559
Query: 361 atgaggctattatatctttttaaatggctttcatcgttttttcatgtggactatgatcct 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 atgaggctattatatctttttaaatggctttcagcgttttttcatgtggactatgatcct 619
Query: 421 ttaaatagaaattctgtgcccaaagtaggcattgatgttagtagagaggaagtgtaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttaaatagaaattctgtgcccaaagtaggcattgatgttagtagagaggaagtgtaaaat 679
Query: 481 aacagtcatcaatgaaacacacttacctttcagaagaaaaatatgatttgctttttgcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacagtcatcaatgaaacacacttacctttcagaagaaaaatatgatttgctttttgcta 739
Query: 541 tattcataaaaagtggtttttgttatcagaggtcaccttaatttaatttaatgtaataca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tattcataaaaagtggtttttgttatcagaggtcaccttaatttaatttaatgtaataca 799
Query: 601 cttataatgtttatatttatctggactatggcatacttaa 640
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 800 cttatagtgtttatatttatctggactatggcatacttaa 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space: 648270
Effective search space used: 648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
