Query= MSMg01no522_f16.b1 MSMg01no522_f16.b1 CHROMAT_FILE:
MSMg01no522_f16.b1 PHD_FILE: MSMg01no522_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:56 2005
(648 letters)
>mm_chr1_36003020_36004067
Length = 1048
Score = 1098 bits (568), Expect = 0.0
Identities = 610/624 (97%)
Strand = Plus / Minus
Query: 4 ggaattctacatttgacgtggactactttttttctaagaataaatgaatgaatttatgta 63
||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 624 ggaattctacattcgacgtggacttttttttttctgagaataaatgaatgaatttatgta 565
Query: 64 cacaggtagcatatgcatacacacttggaggccagagaaggaaggcagtttgccttgttc 123
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 564 cacatgtagcatatgcatacacacttggaggccagagaaggaagacagtttgccttgttc 505
Query: 124 taccatgtttgctttattctctttagaaacagtttcttttgtgacaaaggcttggtcccc 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taccatgcttgctttattctctttagaaacagtttcttttgtgacaaaggcttggtcccc 445
Query: 184 agctagtaattagaggtcattgacaatgtcccttgaaggacatattgggacccagcttcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agctagtaattagaggtcattgacaatgtcccttgaaggacatattgggacccagcttcc 385
Query: 244 ctctctctttctccctggattctattatatgagtggtttgctctttacctctaacagtga 303
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 384 ctctctctttctccctggattctattatataagtggtttgctctctacctctaacagtga 325
Query: 304 ggctctgctttgtcacaggcctaaggtgatggggacaagagaccaaggtatgataaactg 363
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||
Sbjct: 324 ggctctgctttgtcacaggcctaacgtgatggggacaagagaccaaggtacgatcaactg 265
Query: 364 aagccagtatagtgagtcagaatcaatcttttctcctttgagctgcagtacaggatattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 aagccagtatagtgagtcagaatcaatcttttctcctttgagctgcagtacagaatattt 205
Query: 424 gaacctgtttctagttgtggtgtggctcagcccttagcacatacctttaattcctctggt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaacctgtttctagttgtggtgtggctcagcccttagcacatacctttaattcctctggt 145
Query: 484 gggaatatgaacatgtccttagtactcacctttaatctcaaacaatgaaggtcaagctgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gggaatatgaacatgtccttagtactcacctttaatctcaaacaatgaaggtcaagctgt 85
Query: 544 agaaggaagcatccatgtatgaaagcgatgtctaattgagtagcagacaaagtgacaaat 603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 84 agaaggaagcatccatgtatgaaagcgatgtctaattgagtagcaggcaaagtgacaaat 25
Query: 604 cagagaaagatttggtgggatagg 627
||||||||||||||||||||||||
Sbjct: 24 cagagaaagatttggtgggatagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_f16.g1 MSMg01no522_f16.g1 CHROMAT_FILE:
MSMg01no522_f16.g1 PHD_FILE: MSMg01no522_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:56 2005
(361 letters)
>mm_chr1_35869370_35870130
Length = 761
Score = 661 bits (342), Expect = 0.0
Identities = 356/364 (97%), Gaps = 6/364 (1%)
Strand = Plus / Plus
Query: 1 tggataaggaatgtgtgactccaggtacataggaggaggggcacccatttttaagagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggataaggaatgtgtgactccaggtacataggaggaggggcacccatttttaagagtga 260
Query: 61 aagagtgtgggccacctgtagccctctgatatctggcaagcaagtctagaaacctcctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagtgtgggccacctgtagccctctgatatctggcaagcaagtctagaaacctcctca 320
Query: 121 gggtggcaaaaatggtgcttgtcattctcctagaatacaggcacctggggagtatgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtggcaaaaatggtgcttgtcattctcctagaatacaggcacctggggagtatgttta 380
Query: 181 taacctcacaaaaaatgttctgggcaagggttttgttgttgttgttgttgttgttgtt-- 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacctcacaaaaaatgttctgggcaagggttttgttgttgttgttgttgttgttgttgt 440
Query: 239 ----ttgatgggtttattgttttgttttattttgttttattttgggatgctatacctgac 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttttgatgggtttattgttttgttttattttgttttattttgggatgctatacctgac 500
Query: 295 cctctagtgaaagatcctggcagaatgtaaaaggacacagaatccctgaaattggcaaga 354
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 501 cctctagtgaaagatcctggcagaatgtaaaaggacacaaaagccctgaaattggcaaga 560
Query: 355 taga 358
||||
Sbjct: 561 taga 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space: 264704
Effective search space used: 264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
