Query= MSMg01no522_f21.b1 MSMg01no522_f21.b1 CHROMAT_FILE:
MSMg01no522_f21.b1 PHD_FILE: MSMg01no522_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:57 2005
(526 letters)
>mm_chr1_137053270_137054194
Length = 925
Score = 992 bits (513), Expect = 0.0
Identities = 519/521 (99%), Gaps = 1/521 (0%)
Strand = Plus / Plus
Query: 6 gaattcctaccctgttctgtctagctggagctcacagcctcagttcttgtgggccctcct 65
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcctaccctgc-ctgtctagctggagctcacagcctcagttcttgtgggccctcct 264
Query: 66 tgatccaatgtgaatccaaccacagctagttttatactgaccctcgatctcttgggtccc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgatccaatgtgaatccaaccacagctagttttatactgaccctcgatctcttgggtccc 324
Query: 126 cctcccccactccctgttctgcctcccctttgcctggaaatagagactggaatgttccgt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctcccccactccctgttctgcctcccctttgcctggaaatagagactggaatgttccgt 384
Query: 186 gtagaataagcaatctcttcaccctgcatctgcagtaagaaacagccacatctgtccttg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtagaataagcaatctcttcaccctgcatctgcagtaagaaacagccacatctgtccttg 444
Query: 246 gtttgtgagaggatttgggtgaggccactactcagccgtgaatatatccagcctggaaga 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtttgtgagaggatttgggtgaggccactactcagccgtgaatatatccagcctggaaga 504
Query: 306 ggatctcttattgctggggggatttgaagacagggtctggagatttagctcattgacaga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggatctcttattgctggggggatttgaagacagggtctggagatttagctcattgacaga 564
Query: 366 gcgctgatggagcatacaatagaccaggccctggcttccattgactgcatgggggaaaaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcgctgatggagcatacaatagaccaggccctggcttccattgactgcatgggggaaaaa 624
Query: 426 gatttgaggaaaaactggatggtgtttgctgcttctcaggagctttccaaccccttacaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatttgaggaaaaactggatggtgtttgctgcttctcaggagctttccaaccccttacaa 684
Query: 486 ggataagatgcaccccctaggggctggagagatggctcagt 526
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggataagatgcaccccctaggggctggagagatggctcagt 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space: 472140
Effective search space used: 472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_f21.g1 MSMg01no522_f21.g1 CHROMAT_FILE:
MSMg01no522_f21.g1 PHD_FILE: MSMg01no522_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:57 2005
(561 letters)
>mm_chr1_137268880_137269840
Length = 961
Score = 1077 bits (557), Expect = 0.0
Identities = 560/561 (99%)
Strand = Plus / Minus
Query: 1 tgtagtagtgagggtttctgtgtgcctgagcatcgccagtgggaaatgtgtgcaagtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tgtagtagtgagggtttctgtgtgcctgagcatcgccagtgggaaatgtgtgcaagtgaa 702
Query: 61 cccttgagcgttagactgcatccaggaatgtatgggagcgagtcagtgtgcccttgtatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cccttgagcgttagactgcatccaggaatgtatgggagcgagtcagtgtgcccttgtatg 642
Query: 121 tgcatgcacatgaactttcagtcgtgcacaggaatgcatccgtcggtggtaagtgtgcag 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 641 tgcatgcacatgaactttcagtcgtgcgcaggaatgcatccgtcggtggtaagtgtgcag 582
Query: 181 taggtataagcacgtctggggctgaagtggggtctgtagtagtgaacactaactgggccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 taggtataagcacgtctggggctgaagtggggtctgtagtagtgaacactaactgggccg 522
Query: 241 tgttcaagtacttcggatgtatgtttgagtgttgcatgtaactgcccaggcctgataaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgttcaagtacttcggatgtatgtttgagtgttgcatgtaactgcccaggcctgataaac 462
Query: 301 atggggatgatgacaccatacaggagatcagcatgaggggaggaccaccttagaggcagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atggggatgatgacaccatacaggagatcagcatgaggggaggaccaccttagaggcagc 402
Query: 361 tatgttggattacaagataccagcatctggagctgcccatcttctacccaagtgggactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tatgttggattacaagataccagcatctggagctgcccatcttctacccaagtgggactc 342
Query: 421 tcccaggctagcctgcctcctgaaggctctctaacctgcttgcaggggtggggtaggagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tcccaggctagcctgcctcctgaaggctctctaacctgcttgcaggggtggggtaggagt 282
Query: 481 gggggagaaacaaacttgctcaacacagactgacctgcttagcttcatacatagctccct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gggggagaaacaaacttgctcaacacagactgacctgcttagcttcatacatagctccct 222
Query: 541 gctcaactctgggcaagcaga 561
|||||||||||||||||||||
Sbjct: 221 gctcaactctgggcaagcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
