NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCC
GCGGAATTCATGATTGTGTCATAGGAATTGTTATAGTGAACATTACATAG
TACACTGTGATCCCACACAGCAGTCCTAGAGCTGCTTTATGGAGCCCATC
TTTGGAAACAGGGATCCTGACACTGAGCAATGCTCTTCTGCTGAGGAAGA
TCTGTAGACAACAGTCTGTTATGAGTCAATGTCTTCTCTGCCATTCTGCC
AGTCTAGTTCTAAACAAACTAAATTGAGTTCGTGGTCCCTTTGTGTACTC
AACAGATTGGATCTGGGACTTGCTACATAAGTCAAATTGTAGTTTTACAT
CTAAAGTAAAATGGAGTATATGCCTTTTTTCTATGTCAAATCATCTGTGT
ATTGCTTATGATACCCCATACAATGTAGATGCTCTGCAAATTATTATACT
TGGAACATAATGACAAGAAAAAAAAAGTAGACAATCCCTTACCTAATACA
CTTAAGGCCCAAGACCTTTTTCTTGCATTATTTTGTTAACTGAATCAACA
GATGTGATTGAGGGCTATGTGAATGAGGGCTCCCTACAGTTACTAAGTTA
CCACCACAAAACTAAAAGTGACAACATCAGAGATCATCTACTCAGCCTGG
CCTTTTAATGACTCCTGGATAGACCATGTGGGCACATGCTTGACCACTAA
CCTTTGACATTCGCTTTCACTATTAAGATGAAACNAAAATTCCTGAGTTC
TTGGTCACATGTTCCAAGTTCTAAN

NNNNNGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTTGAATCCATCTAAC
ATGGGCCTTTGCTTGTTGGGAGAATTTTAATTACTATTTCTAGTTCACTA
GGGATAGTGGATCTGTTTAAATTGCTTATCTGTTGTTGATTTCACTTTTG
AAGGTGTTATGTTTTGAGAAAACTGTCCATTCCTTTTAGATTTTATAATT
TTTTCAAATATAGGTTTTTAAAGTATATTCTTATGATTCTCTGAATTTCT
TCAGTGTCAGTTGTTCACATTTTCATATCTAATTTTGTTAATTTAGATAC
TCATTCTCCACATTTTACTTAATTCGGTTAACAGCTTGTCAATTCTATTA
ATTTTCTCAAAGAACAAACTGCTTATTTCATTTAGTCTTTATATTTTTTG
TTCATCTCTAGTTTATTGATTCCATATCTGACTTTGATTATCTCTTGTTT
TCTAATCCTTTTGGGTATGATATCTTTTTTTTTGGTTCTAGAGCTTTCCG
TTTTGCTGTTATATTACGAGTGTGATATCTCTCCATGTTTTATGTAGGCT
CTGAGCAGTANGATATTGTCTCTTAGAACCATTTTCATTATGTCTCATAA
TTTTGGGTATGCTGTGTTTTCATTTTCCTTNCATACTAAAGTCTTTCCTT
TCTTTTCTTGACCATCTTTCATTCATTAGAGAGTTGNTCAGTTTCCATAA
ATTTTGTAGTTTTCTGTTGTTTN

Query= MSMg01no522_j22.b1 MSMg01no522_j22.b1 CHROMAT_FILE:
MSMg01no522_j22.b1 PHD_FILE: MSMg01no522_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:15 2005
         (576 letters)



>mm_chr1_3404623_3405598
          Length = 976

 Score = 1062 bits (549), Expect = 0.0
 Identities = 564/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcatgattgtgtcataggaattgttatagtgaacattacatagtacactgtgatcc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatgattgtgtcataggaattgttatagtgaacattacatagtacactgtgatcc 267

                                                                       
Query: 68  cacacagcagtcctagagctgctttatggagcccatctttggaaacagggatcctgacac 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cacacagcagtcctagagctgctttatggagcccatctttggaaacagggatcctgacac 327

                                                                       
Query: 128 tgagcaatgctcttctgctgaggaagatctgtagacaacagtctgttatgagtcaatgtc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgagcaatgctcttctgctgaggaagatctgtagacaacagtctgttatgagtcaatgtc 387

                                                                       
Query: 188 ttctctgccattctgccagtctagttctaaacaaactaaattgagttcgtggtccctttg 247
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 388 ttctctgccattctgccagtctagttctaaacaaactaaattgagttcatggtccctttg 447

                                                                       
Query: 248 tgtactcaacagattggatctgggacttgctacataagtcaaattgtagttttacatcta 307
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgtacttaacagattggatctgggacttgctacataagtcaaattgtagttttacatcta 507

                                                                       
Query: 308 aagtaaaatggagtatatgccttttttctatgtcaaatcatctgtgtattgcttatgata 367
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 508 aagtaaaatggaatatatgccttttttgtatgtcaaatcatctgtgtattgcttatgata 567

                                                                       
Query: 368 ccccatacaatgtagatgctctgcaaattattatacttggaacataatgacaagaaaaaa 427
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cctcatacaatgtagatgctctgcaaattattatacttggaacataatgacaagaaaaaa 627

                                                                       
Query: 428 aaagtagacaatcccttacctaatacacttaaggcccaagacctttttcttgcattattt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaagtagacaatcccttacctaatacacttaaggcccaagacctttttcttgcattattt 687

                                                                       
Query: 488 tgttaactgaatcaacagatgtgattgagggctatgtgaatgagggctccctacagttac 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tgttaactgaatcaacagatgtgattgagggctatgtgaatgagggctccctacagttac 747

                                        
Query: 548 taagttaccaccacaaaactaaaagtgac 576
           |||||||||||||||||||||||||||||
Sbjct: 748 taagttaccaccacaaaactaaaagtgac 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)