NNNNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTGGTGTAACTCTTAGGGTCACTTATATATACTATCAT
ATCATCTGCAAAAAGTGATATTTTTTCTTCTTCCTTTCCAATTTGTATCC
CCTTGATCTCATTTTGTTGTCAAATTGCTCTGGCTAGGAATTCAAGTACA
ATGTTGAATAGGTAGGGAGAAAGTGGGCAGCCTTGTCTAGTTCCTGATTT
TAGTGGGATTGCTTCCAGCTTCTCACCATTTACTTTGATGTTGGCTACTG
GTTTGCTGTAGATTGCTTTTATCATAGTTAGTTATGGGGCTCGAATTCCT
GATATTTCCAAGACTTTCATCATGAATGGGTGTTAGATTTTTTCATATGC
ATTCCAGTATCTACCGAGATGGTCATGTGGTTTTTTTTCTTTGAGTTTGT
TTATATAATGGATTATGTTGATGGATTTCCATATATTAAACCATACCTGC
ATCCCTGGAGTGAAACCTACTTGGTCAGATTGGATGATTGTTTTGATGTG
TTCTTGGATTCGGTAAGCAAGAATTTTATTGAGTATGTTTGCAATGATAT
TCATTAGGAAATTGGGTCTGAAGTACTCTATATTTGTTGGGTCTTTCTAT
GGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAATTCAGAAGAGT
ACCTTCTGCTTCTATTTTTTGGAGTAGTTTGTGAAGTACTA

TATTTTCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAATTACAGAATG
ACCTGTCATTACTAGTATTTTTATTCTTTTTCTACATTAGGTTTCTCTTC
TTTTAAATATCACAGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTGTGTGTGTGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTA
TGCATGTCTGTCTGTCTGTGTGTCTCTCTGTCCTATCAAACTGCATTTCT
TGCTATTTTTCTCAGCTACAGGCTTATTCTCTAGTATAATATATGTTATT
ATTTATATGCAGCAAAGTCTTTGTGGTTTTCCATTTTTAAACAAAGTTTT
CAAACACAAACTATATGCCAATGTTACCCGCCAAAGACTAAAATTTTAAT
AGGAATATATTTGTCTTATTTTATTTTCATGATGTAATAGTTATCCTATC
AAAAGATACAGAAATTATCATAGTATCAATGTTATATGCTAAGAAAATGT
TAGTTTTGGAATAGATGTCAAATTGAATAAGCATATTTCCTCAAATTTTA
ACTGGATTCGATTTCTCATTGGAGTAAGTTTGTTCCTCCTTCTCAAGAAG
TGCAAGAATTTTTGTTTTTGTTGCATGCTGTCATTTTTGTCTGCTAAGTA
TCATTTATTTATACCAAAAATACATTCCTCATAAACACTCAATG

Query= MSMg01no522_o15.g1 MSMg01no522_o15.g1 CHROMAT_FILE:
MSMg01no522_o15.g1 PHD_FILE: MSMg01no522_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:39 2005
         (513 letters)



>mm_chr1_49870447_49871359
          Length = 913

 Score =  791 bits (409), Expect = 0.0
 Identities = 492/541 (90%), Gaps = 36/541 (6%)
 Strand = Plus / Plus

                                                                       
Query: 3   acaattacagaatgacctgtcattactagtatttttattctttttctacattaggtttct 62
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acaatcacagaatgacctgttattactagtatttttattctttttctacattaggtttct 238

                                                                       
Query: 63  cttcttttaaatatcacagctttctctctctctctctctctctctctctctctctctctg 122
           ||||||||||||||||||||||||||||||||||||||||||||||| | | | | | ||
Sbjct: 239 cttcttttaaatatcacagctttctctctctctctctctctctctctgtgtgtgtgtgtg 298

                                                                       
Query: 123 tgtgtgtgtgcgtgtg--cgtgtgcg----------------tgtgcgtgtgtgtgtgtg 164
           ||||||||||||||||  ||||||||                |||| |||||||||||||
Sbjct: 299 tgtgtgtgtgcgtgtgcacgtgtgcgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtg 358

                                                                       
Query: 165 tatgcatgtctgtctgtctgtgtgtctctctgtcctatcaaactgcatttcttgctattt 224
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 359 tatgcatgcctgtctgtctgtgtgtctctctgtcctatcaaactgcatgtcttgctattt 418

                                                                       
Query: 225 ttctcagctacaggcttattctctagtataatatatgttattatttatatgcagcaaagt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttctcagctacaggcttattctctagtataatatatgttattatttatatgcagcaaagt 478

                                                                       
Query: 285 ctttgtggttttccatttttaaacaaagttttcaaacacaaactatatgccaatgttacc 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 479 ctttgtggttttccatttttaaacaaagttttcaaacacaaactatatgccaatgtta-- 536

                                                                       
Query: 345 cgcca------------aagactaaaattttaataggaatatatttgtcttattttattt 392
               |            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ----atattattgtgtaaagactaaaattttaataggaatatatttgtcttattttattt 592

                                                                       
Query: 393 tcatgatgtaatagttatcctatcaaaagatacagaaattatcatagtatcaatgttata 452
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 593 tcataatgtaatagttatcctatcaaaggatacagaaattatcatagtatcaatgttata 652

                                                                       
Query: 453 tgctaagaaaatgttagttttggaatagatgtcaaattgaataagcatatttcctcaaat 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tgctaagaaaatgttagttttggaatagatgtcaaattgaataagcatatttcctcaaat 712

            
Query: 513 t 513
           |
Sbjct: 713 t 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)