GGGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCATTATGAGGTACTTGTGCATAGCACAGACCATAATCA
GTACAACTAAGAAATAGGCAGCCAGTCGAATCGGAGTAAATGGTTGACTA
GTATTTGTTATTAGGTATTTGCATATCTTTTTTAGGGGTGTCTTATGTCA
AGAAAACATAAAAAAGTGAAAATTAATTGTTTTGGTTTGGTTTGGGTTTT
ATTTGATTTGATTTGATTTGATTGATTTGGTCCTGGTTGGAAGTTATAAC
ACCACTTTCCCTAAATTGACCTTATCTTTTTTTGAAAAGGCTTTGCACTA
TATTTGTCTTACATTATACTTAAATAATTGATCAGGATTTTAGTTTCTTG
ATAACTTTTAAATTAACTGTCATTAGTCTGTGGTAAAATGCATTTTAAAA
GAAAAATAAGCCAACCAAAATTATATAAATAAGTAGATACTTCTCAAAAA
ATATCCATAAAAACCTGAGTAGGAAAAAAAAAAGCTTAATATAATTTGCT
GTCATTATTTTTTTTTACTAAAGCCATGATAAGTTACCTTGCCACTTAGT
TAGAATAGCATTAGAGAAAGGAACCCTTAAAATTATAAATGCTAATGAAT
GTGTGGTGAAAAATTTATAAGCTGTTGATGGGAATGTAACTAAGAGAAAT
TACTATAGATGACAACTGAGATTTCTTAAAAATTAAAN

GGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTCCTCCTGCACCATCT
CTGCCTGAATGCTGCCATTCTTCCTGCAATGATGATAATGGACTAAATCT
CTGAACCTGTAAGCCAGCTCCAATTAAATGTGTCCTTCACAAGAGTTACA
TTGGTCATGGTGTCTGTTCACAGCAGCAACTCCTAACCAAGACACCGTCC
CTGACCTCAAACTGTACTACAAAGCAATAATAATAAATCCCATGTTGTAT
TGGCATAAAAACATACAGATTGAATGATGGAATTGAATAGAAGACACAGA
AGTAAAACTACACCCTTATGAACACTTGATTTTTTTTTACAAAGAATCCA
AAGCTATACAATGGAAAAAAATAAAGTATCTTTAACACACTGTACTTGTT
TAACTGTATTCTGCATGTAGAAGAATACAAATAGATCTACAGCTATCTCC
CTGCACAAATCTTAAATCCAAATGGATCAAAGATCTTGACATAATACTAG
ATATACTATATCTGATAGAAGAAAATAGGGCATATTATTGAATACATTGA
TAGAGGAGACAACCAGCTGAACATAACAGCAACCGTTTAGGCACTGAGGT
TATCAAGTAATTAACTGAAACTGAAATCATGAGATTGAAATGCTTCTGTA
AGGTAAAAGACTCTGTCAAAGTAACAAAACAGCAGCCTACN

Query= MSMg01no523_a09.b1 MSMg01no523_a09.b1 CHROMAT_FILE:
MSMg01no523_a09.b1 PHD_FILE: MSMg01no523_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:48 2005
         (609 letters)



>mm_chr1_141983333_141984341
          Length = 1009

 Score =  994 bits (514), Expect = 0.0
 Identities = 580/606 (95%), Gaps = 9/606 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatcattatgaggtacttgtgcatagcacagaccataatcagtacaactaagaa 63
           |||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 ggaattcatcaaaatgaggtacttgtgcatagcacagagcataatcagtacaactaagaa 263

                                                                       
Query: 64  ataggcagccagtcgaatcggagtaaatggttgactagtatttgttattaggtatttgca 123
           ||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 atatgcagccagttgaatcagagtaaatggttgactagtatttgttattaagtatttgca 323

                                                                       
Query: 124 tatcttttttaggggtgtcttatgtcaagaaaacataaaaaagtgaaaattaattgtttt 183
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 tatcttttttaggggtgtcttatgtcaagaaaacacaaaaaagtgaaaattaattgtttt 383

                                                                       
Query: 184 ggtttggtttgggttttatttgatttgatttgatttgattgatttggtcctggttggaag 243
           |||||||||||||     |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtttggtttggg-----tttggtttgatttgatttgattgatttggtcctggttggaag 438

                                                                       
Query: 244 ttataacaccactttccctaaattgaccttatctttttttgaaaaggctttgcactatat 303
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 439 ttataacaccactttccctaaattgaccatatctttttttgaaaaggctttgcactatat 498

                                                                       
Query: 304 ttgtcttacattatacttaaataattgatcaggattttagtttcttgataacttttaaat 363
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 499 ttgtcttatattatacttaaataattgatcatgattttagtttcttgataacttttaaat 558

                                                                       
Query: 364 taactgtcattagtctgtggtaaaatgcattttaaaagaaaaataagccaaccaaaatta 423
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaactgtcattagtctgtggtaaaatgcattttaaaagaaaaataagccaaccaaaatta 618

                                                                       
Query: 424 tataaataagtagatacttctcaaaaaatatccataaaaacctgagtaggaaaaaaaaaa 483
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 619 tataaataagtagacacttctcaaaaaatatccataaaaacctgagtaggaaaaaaaaac 678

                                                                       
Query: 484 gcttaatataatttgctgtcattatttttttttactaaagccatgataagttaccttgcc 543
            ||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||
Sbjct: 679 -cttaatataatttgctgtcatt---tttttttaccaaagccatgataagttaccttgcc 734

                                                                       
Query: 544 acttagttagaatagcattagagaaaggaacccttaaaattataaatgctaatgaatgtg 603
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 735 acttagttagaatagcattagagaaaggagcccttaaaattataaatgctaatgaatgtg 794

                 
Query: 604 tggtga 609
           ||||||
Sbjct: 795 tggtga 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)