Query= MSMg01no523_f15.b1 MSMg01no523_f15.b1 CHROMAT_FILE:
MSMg01no523_f15.b1 PHD_FILE: MSMg01no523_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:14 2005
(407 letters)
>mm_chr1_33118050_33118858
Length = 809
Score = 745 bits (385), Expect = 0.0
Identities = 403/409 (98%), Gaps = 2/409 (0%)
Strand = Plus / Minus
Query: 1 ggggtcgatagagaa-cacatgggagatgctgaacatcaccactgtctttgtgtgctctt 59
||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 609 ggggtcgatagagaagcacacgggagatgctgaacatcacctctgtctttgtgtgctctt 550
Query: 60 tcttaacttgaccttctgctgttactcctattctacattttgactgcttagctgtcttat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcttaacttgaccttctgctgttactcctattctacattttgactgcttagctgtcttat 490
Query: 120 agtctgtggttacactaattttttgaggcaatattccttatgacttta-tttttttctat 178
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 489 agtctgtggttacactaattttttgaggcaatattctttatgactttattttttttctat 430
Query: 179 ctggcaaacattcacagttattcattcattttttgcatagaaccacagactttacattat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctggcaaacattcacagttattcattcattttttgcatagaaccacagactttacattat 370
Query: 239 gagctcactataacatcacagttcagtatgtaacttgataatcctacaaacctagccaaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gagctcactataacatcacagttcagtatgtaacttgataatcctacaaacctagccaaa 310
Query: 299 ttaatctctttctttccccattgctcatgtttctaactttttcagtggataccgcccaat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 309 ttaatctctttctttccccattgctcatgtttctaactttttcagtggataccacccaat 250
Query: 359 tccaagtaggtcttatccgaattgttccctatgacctttgcctttccat 407
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tccaagtaggtcttatccgaattgttccctatgacctttgcctttccat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 809
Length adjustment: 9
Effective length of query: 398
Effective length of database: 800
Effective search space: 318400
Effective search space used: 318400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_f15.g1 MSMg01no523_f15.g1 CHROMAT_FILE:
MSMg01no523_f15.g1 PHD_FILE: MSMg01no523_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:14 2005
(500 letters)
>mm_chr1_32973359_32974258
Length = 900
Score = 938 bits (485), Expect = 0.0
Identities = 497/501 (99%), Gaps = 1/501 (0%)
Strand = Plus / Plus
Query: 1 agcacaaggctggcaggcatgccactggagtggtagctgagaacttacatcctgatccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agcacaaggctggcaggcatgccactggagtggtagctgagaacttacatcctgatccac 259
Query: 61 aagcacaaggcagaaagagagagctaactagaaatggtgtgtactttttaagcctccaag 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 260 aagcacaaggcagaaagagagagctaactagaaatggtgtggactttttaagcctccaag 319
Query: 121 acagccccagtgacatactcgtttcaacaaggctaatccttaccaaa-cgttccactaaa 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 acagccccagtgacatactcgtttcaacaaggctaatccttaccaaaacgttccactaaa 379
Query: 180 tagagacccagcactcaaatacaagggcctatagggccattgtcattcagaccactcatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagagacccagcactcaaatacaagggcctatagggccattgtcattcagaccactcatt 439
Query: 240 tgctaattaccttgcacaccaatcaatcatagtgccacagaggctaaaacatatacacaa 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgctaattaccttgcacactaatcaatcatagtgccacagaggctaaaacatatacacaa 499
Query: 300 aattaaatgagaatatgtgaaagtatttttaatctataggaaagttattaaaataaaata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aattaaatgagaatatgtgaaagtatttttaatctataggaaagttattaaaataaaata 559
Query: 360 tatctaattaggcaaatccagtatctgctctatggagtaacatttctcattagtctcctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatctaattaggcaaatccagtatctgctctatggagtaacatttctcattagtctcctc 619
Query: 420 ttacttataccatctgatcttttaggctcagtaatagttaaacctcccattaataacata 479
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 620 ttacttataccatctgatcttttaggctcagtaatagttaaacctccaattaataacata 679
Query: 480 aatatgtgctgctaaagagat 500
|||||||||||||||||||||
Sbjct: 680 aatatgtgctgctaaagagat 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
