GGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACATTTTCATCCACAGACTGCAAAGGGACTGTCAACACTG
GGCTTAGTTTGATCTAAAATACCTCTTCCATAGTAACTCACTTTGTCCAA
CAAGGCCACATGTATTTCCCAGAAGTCCATACCTCCTAAAATTGCTGCTT
CTTGTGAACCAATCATTCAAATACATGAATCTTCAGGGCCCATACTTATT
CAAAACAGCATATTGTGGCATGTATTTTAATTGATAGAGATGTTTCCCCT
ATTCCCGTCATCTGTACAAATCGAATGATTTCTGCTGTCCTTTGCCTATA
GCGGGGGAAGGATCTTCTCTTTAACCTAGAAGACTGGGTTAAAGATTCCC
ATACTTTGTAACTTCCAAAGCAGCTCAGTGTGTAAAGTGAGATGTTGAAT
ACCCACATTTTTCTATGGATTCAATTCTTTCAGTAATCAGTATGACTCTG
ATTGGTTTTAAAGCCAAATAGTTTATATTTTTGAGGCTAGGAGTGTGAAA
TAAAGTAACACAGCTGCACTTCTCAATGCTCTAAAGGAGAGTCTTTCCTT
CAGTGGGTTGTGACAGCATGACCAAAAGCTATGACTCCACTTTCGGGAGG
TTCATTCCCGTGTTTTCTTCCACTTCTCTTTGGAATTCCTGTAATGGAAT
TGGAAAGGATGGAAGTAAATTATGTATATGAAAATTGGCCCAA

CGCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTATCTTTCCAGAACTTTTATC
ATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGA
TAGATTTTGGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACT
TGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGCTTAGCGAG
AATTTTATTGAGGATTTTTGCATTGATATTCATAAGAGAAATTTGTCTAA
AGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATA
GTGGCTTTATAAAATGACTTGGGTAGAGTACCTTCTACTTCTATCTTGGG
AAAAAGTTTGTGCAGAACTGGAATTAGATCTTTTTGAAGGTCTGATAGAA
CTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTTGGCTGGGAAACTA
TTTATAACAGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTC
AACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGT
CCATTTCGTCCAGGTTTTCCAGGTTTGTTGAGTATAGCCTTTTGTACAAA
GATCTGACTGGGGTTTGGGATTCTTCACGAACCGTTGGTATGN

Query= MSMg01no523_g11.b1 MSMg01no523_g11.b1 CHROMAT_FILE:
MSMg01no523_g11.b1 PHD_FILE: MSMg01no523_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:18 2005
         (489 letters)



>mm_chr1_100908520_100909408
          Length = 889

 Score =  909 bits (470), Expect = 0.0
 Identities = 482/486 (99%), Gaps = 2/486 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacat-tttcatccacagactgcaaagggactgtcaacactgggcttagtttga 63
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacatcttt-atccacagactgcaaagggactgtcaacactgggcttagtttga 263

                                                                       
Query: 64  tctaaaatacctcttccatagtaactcactttgtccaacaaggccacatgtatttcccag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctaaaatacctcttccatagtaactcactttgtccaacaaggccacatgtatttcccag 323

                                                                       
Query: 124 aagtccatacctcctaaaattgctgcttcttgtgaaccaatcattcaaatacatgaatct 183
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 aagtccatacctcctaaaattgctgcttcttgtgaaccaaccattcaaatacatgaatct 383

                                                                       
Query: 184 tcagggcccatacttattcaaaacagcatattgtggcatgtattttaattgatagagatg 243
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 tcagggcccatacttattcaaaacagcatattgtggcatgcattttaattgatagagatg 443

                                                                       
Query: 244 tttcccctattcccgtcatctgtacaaatcgaatgatttctgctgtcctttgcctatagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttcccctattcccgtcatctgtacaaatcgaatgatttctgctgtcctttgcctatagc 503

                                                                       
Query: 304 gggggaaggatcttctctttaacctagaagactgggttaaagattcccatactttgtaac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gggggaaggatcttctctttaacctagaagactgggttaaagattcccatactttgtaac 563

                                                                       
Query: 364 ttccaaagcagctcagtgtgtaaagtgagatgttgaatacccacatttttctatggattc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttccaaagcagctcagtgtgtaaagtgagatgttgaatacccacatttttctatggattc 623

                                                                       
Query: 424 aattctttcagtaatcagtatgactctgattggttttaaagccaaatagtttatattttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aattctttcagtaatcagtatgactctgattggttttaaagccaaatagtttatattttt 683

                 
Query: 484 gaggct 489
           ||||||
Sbjct: 684 gaggct 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)