BAC Information

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BAC

Clone NameMSMg01-523H04
Chromosome1 (Build37)
Map Location 63,004,370 - 63,004,505
singlet/doubletsinglet
Overlap genenone
Upstream genePard3b, LOC667592, Nrp2, LOC100043070
Downstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523H04.T7 (MSMg01no523_h04.b1)MSMg01-523H04.TJ (MSMg01no523_h04.g1)
ACCAG593764AG593765
length750751
length of high quality
(start - end)
---136 (270 - 405)
definitionCHROMAT_FILE: MSMg01no523_h04.b1 PHD_FILE: MSMg01no523_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:22 2005CHROMAT_FILE: MSMg01no523_h04.g1 PHD_FILE: MSMg01no523_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCGAGAGGATCCG
CGGAATTCTTATATTTCCCCCCCCCACCACACACACACATCAGTGTTTTT
CCCAGTGTGCTTTGTAAAGGAGATATTTGTCAGACGTCTGTATATGATGG
GTGTGCATTTTCTTACTGACTGCTTTAGCGCTATAAAGAAAATACTTGGC
CGCGCTGTGAGCAAATGCCTTGGCTGCTTTGGTGGTGGGGCTAGAAGATG
ATTGCTCATAGACTGAGCTAGTCCTTGAGTTATAGACTTGGGGTCTACAT
AAATACCTAACGAACTACCAAACCTGCTCATTTGACATCTGACATATATC
ATCCCTGGAAGTTCACAGCCTCCTAGTATAGACATAGAGTTTATCTTATG
CCTCTTGAATTTGTATGAACATGATAGATTAGGACAACAGGGAATGGAAA
ATGAGTTTGTATAGACTGGTTATAAACCAATACTTCATGGAAGCAAATTA
CAGTCCAAAGCTTATTTGTGCCTGGAACTAGAGCACAGGGAATTAGTTGG
GTTTTATTCCTAGGCAATGTCAAGAAGTTGCAGTAGCGTATTCAGACATT
CCTGCTCTTGGGTTTGATCCCCACAGCACTATTTCTGCCTCACTTAGCCC
GGATAGAGTGTTGGGAACTGCAATTCCATTTCATGCCTCAGGATGGCTAC
CTATGACTGCTGTGCTCTTTGAGCTATAGCACACTGTACGGTTGTCATGC

NNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAATATTTAAGTGTGT
AAATAATGTCCCCAGCACACCTGGGGACAGCCCTCAGCAACACGACAAGT
TCACAAAAGCATACGCGTTCCTTTCCTTGATCCACTGAAACAAGGCACCA
TAGTCAGGATGTTTAAAAACAAAACAGCATATGATCATACAGTTACTGGA
GGGCAGAAGTCTGAAATGGGTCTCCCTGGGCTCTGGTGAGGTTATCTATA
GGGCCTCATTTTTTTCAATAAGAGAATCAATTTCGTTTCCTTTCCCAGAT
TCCAGACATGGTCCACGGTCCCTGTTCATCCACCATCCACCCTCTCCAGA
GTCAGAAGAGGAATACCTTGAAATCCTTAACTCCAGCATCCCTCTAGGCC
TGTGTACAGGACTCTGTTGGTTAGCTGGGCCCAGCTAGATAATCCAGGAA
GACATCACTATTTCCAGGATATCTAGTTAGGACCTTAACTCTGTCTGAAA
CCTCACGTCCACACTGTTCTATAACGTAAACGGTCATGGGTTCCAGGGAA
TGGTGCATGGGCATCTTTAGAGATGCGAATCTTCTTCCCACCAGTGGGTC
GTCACTGACCCCTTCTCTACTTCATTGCCTCCTCGTTCACTCTTCCTGCA
CTCAAGGGTACACAGGGCGGCGGAAGTTATTTATCTGATGTCATTGGAGA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_h04.g1 MSMg01no523_h04.g1 CHROMAT_FILE:
MSMg01no523_h04.g1 PHD_FILE: MSMg01no523_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:22 2005
         (136 letters)



>mm_chr1_63004170_63004705
          Length = 536

 Score =  240 bits (124), Expect = 3e-68
 Identities = 133/136 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctccctgggctctggtgaggttatctatagggcctcatttttttcaataagagaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 gtctccctgggctctggtgaggttatctatagggcctcatttttttcaataagagaatcc 260

                                                                       
Query: 61  atttcgtttcctttcccagattccagacatggtccacggtccctgttcatccaccatcca 120
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccttttcctttcccagattccagacatggtccacggtccctgttcatccaccatcca 320

                           
Query: 121 ccctctccagagtcag 136
           ||||||||||||||||
Sbjct: 321 ccctctccagagtcag 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 536
Length adjustment: 8
Effective length of query: 128
Effective length of database: 528
Effective search space:    67584
Effective search space used:    67584
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)