BAC Information

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BAC

Clone NameMSMg01-523I10
Chromosome1 (Build37)
Map Location 118,651,937 - 118,652,333
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523I10.T7 (MSMg01no523_i10.b1)MSMg01-523I10.TJ (MSMg01no523_i10.g1)
ACCAG593824AG593825
length746731
length of high quality
(start - end)
584 (75 - 658)549 (61 - 609)
definitionCHROMAT_FILE: MSMg01no523_i10.b1 PHD_FILE: MSMg01no523_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:28 2005CHROMAT_FILE: MSMg01no523_i10.g1 PHD_FILE: MSMg01no523_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCTTATTTTGCGGCCGCAAAACGACTCATTATTCGAAGAGGATCCGC
GGAATTCCTTTATTTCTGGATCTCATGGAAGCATTTACTCAAGGGAGGCT
TCCTCTGTCATAATTCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCA
GTTCATTTCTGTTTTGTTTAGGAAGTTCTCTCTTGTGCCAATGTGTTGAA
GGCCATTCTGCTTTTTCTGTTCTATCAGGTTCATTGTATCTGAATTTGTG
TTGAGGTTTTTTTATTCACTCAGACTTGAATTTTGTCTAGGGTGAGAGAT
ATGCATATATTTGCATTCCCTTACATACCTACATCCAGTTATACCAGCAA
CATTTGTTCAAGATGCTTCATTTCTTCCATTGTGTGTGTATGAGTGTGTG
TGTATGTGTATATATAATATAATATATATCAGGTTAAATTAGGTATCCAT
AGGTATGTAGATTTATGTCTGTGTCTACTACTGAATTCCATAGATTAGCC
TGTCTGATTTTTTTTAATACCATGCAGTTTTTATTACTGTAGCTCTGTAG
TCCAGCTTATAATCAGCGATGCTGATGCTTCTGAACATCCTTTTATTATA
CAGGATTGTTTTAGATATCCTACGTTTTTTGTTTTTCTCTATGAAGTTGA
CTATTGATCTTTCAAGGTCTGTAGAGAATTGTGTTGCCATTTTGATGGAG
CTTGCATTGAATCTGTAGATTGATTCTTGTAGGATGATCATATTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAAATAGACAGAAGGTAAGCTTCTGAGTAGAAAGACTAGT
TGGTAATGGAATTTAAGCATTTCTAGGGAACAGAAACCCATGTGGTTTTA
GAAAGATTAAGGTGAGAAAATTAATGTTGTAGAGGTTCTCCGTTTAAAAG
AAATTCAAGAGGTTTGCCTTTAATAATAAAAATTGGTGAAATAAATTTCA
AAAATGTGTTGAAGAGATGGCTTAGAAAAGGAAGTGCTTTGAACCCAAGT
CAGAAGGCCTGTGTACAGATTTTCTGCACCCCACAAAATTCTGGATTGTT
AGGTGTGCTTCTGTAATCACAGCACTTGGAACAGGAATTAGTGAAACAGA
GTGTTACCTGTAATTCCATGGGCATCTAGTCTCACCAAAATTATGAGCTA
GAAACACCATGAGTGGCATTGTCCCTGAAAAATAAGGTAGTGGGTAGTGA
AATGGCTCGGTACACAAGACTTTTAAATACTGAAATGTACATGTCAAAGG
ATGAGAGCCAACTTCCTCAAATTTTCTCTATCTTTCACCAACATATATGG
TGAAACTCATGCATATCCAAACAAATACAAATTGATAAATGTGGTTAAAA
TGCAAATAATGTAGAAACAGATTGAGAAACACATTCCAACATTAACTTTA
AATCTTTAGATATACTTTTCTTATGGTAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_i10.g1 MSMg01no523_i10.g1 CHROMAT_FILE:
MSMg01no523_i10.g1 PHD_FILE: MSMg01no523_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:28 2005
         (549 letters)



>mm_chr1_118651937_118652885
          Length = 949

 Score =  714 bits (369), Expect = 0.0
 Identities = 390/397 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatagacagaaggtaagcttctgagtagaaagactagttggtaatggaatttaagcat 60
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 397 caaatagacagaaggtaagcttgtgagtagaaagactagttggtactggaatttaagcat 338

                                                                       
Query: 61  ttctagggaacagaaacccatgtggttttagaaagattaaggtgagaaaattaatgttgt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 337 ttctagggaacagaaacccatgtggttttagaaagtttaaggtgagaaaattaatgttgt 278

                                                                       
Query: 121 agaggttctccgtttaaaagaaattcaagaggtttgcctttaataataaaaattggtgaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 277 agaggttctccgtttaaaagaaattcaagaggtttgcctttaataataaaaaatggtgaa 218

                                                                       
Query: 181 ataaatttcaaaaatgtgttgaagagatggcttagaaaaggaagtgctttgaacccaagt 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 217 ataaatttcaaaaatgtgttgaagagatggcttagaaaatgaagtgctttgaacccaagt 158

                                                                       
Query: 241 cagaaggcctgtgtacagattttctgcaccccacaaaattctggattgttaggtgtgctt 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 157 cagaaggcctgtgtacagattttctgcaccccacaaaactctggattgttaggtgtgctt 98

                                                                       
Query: 301 ctgtaatcacagcacttggaacaggaattagtgaaacagagtgttacctgtaattccatg 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 97  ctgtaatcacagcacttggaacaggaattagtgaaacagagtcttacctgtaattccatg 38

                                                
Query: 361 ggcatctagtctcaccaaaattatgagctagaaacac 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  ggcatctagtctcaccaaaattatgagctagaaacac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)