Query= MSMg01no523_k13.b1 MSMg01no523_k13.b1 CHROMAT_FILE:
MSMg01no523_k13.b1 PHD_FILE: MSMg01no523_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:39 2005
(570 letters)
>mm_chr1_128340229_128341198
Length = 970
Score = 1040 bits (538), Expect = 0.0
Identities = 559/566 (98%)
Strand = Plus / Minus
Query: 5 gaattcaccttttacgacattaagttctgtggaccatgtgggtttaggcacatgccacta 64
||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 770 gaattcaccttccatgacattaagttctgtggaccgtgtgggtttaggcacatgccacta 711
Query: 65 tgagacctgggctcaggtcttacaatccctggatgccattgcatcagacctgagcctgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgagacctgggctcaggtcttacaatccctggatgccattgcatcagacctgagcctgaa 651
Query: 125 aagtcttggcagcaccatggggctgctctttagctcttccttccctgggtaccttggaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aagtcttggcagcaccatggggctgctctttagctcttccttccctgggtaccttggaca 591
Query: 185 cgttttaatcattccctggagtctcctttgtgtcctaattctttttgcagaagcctggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cgttttaatcattccctggagtctcctttgtgtcctaattctttttgcagaagcctggaa 531
Query: 245 ctttaattctgttatctgttctaaagataaggaaacaaactggggcgtgataggcagaag 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 530 ctttaattctgttatctgttctaaagataagggaacaaactggggcgtgataggcagaag 471
Query: 305 ccagaggcagcagggagcagcaggaattggcctccccacctctggaaggaaagcaggtcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccagaggcagcagggagcagcaggaattggcctccccacctctggaaggaaagcaggtcc 411
Query: 365 ctgccaaagtcactgttttcaattagataaaaattcctttgatgtgccctacaccatgtt 424
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 410 ctgccaaagtcactgttttcaattagataaaaattcctttgatttgtcctacaccatgtt 351
Query: 425 tgctgaccctgccttttgtggctcaatggtgtgtaaatggagctatgcagccctaaatga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgctgaccctgccttttgtggctcaatggtgtgtaaatggagctatgcagccctaaatga 291
Query: 485 gatatcaagttcaaatctagagtaactgtcctcagaccatttccatcagagttaatgcta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gatatcaagttcaaatctagagtaactgtcctcagaccatttccatcagagttaatgcta 231
Query: 545 gaatgctagtttcattgattttaggg 570
||||||||||||||||||||||||||
Sbjct: 230 gaatgctagtttcattgattttaggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_k13.g1 MSMg01no523_k13.g1 CHROMAT_FILE:
MSMg01no523_k13.g1 PHD_FILE: MSMg01no523_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:39 2005
(432 letters)
>mm_chr1_128162543_128163374
Length = 832
Score = 783 bits (405), Expect = 0.0
Identities = 426/433 (98%), Gaps = 2/433 (0%)
Strand = Plus / Plus
Query: 1 ttaagttggtgcaactttgaagatacgagacagctcaatatcctccatatttatgtttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagttggtgcaactttgaagatacgagacagctcaatatcctccatatttatgtttag 260
Query: 61 tggccattgataatgggaaaggcttcttttaatgtggagagaggctacatgggagattct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tggccattgataatgggaaaggcttcttttaatgtggagagaggctacatgggagactct 320
Query: 121 agaaaatgaatgtaccaactcaggaccttgtttttcctttttcttaaaatgagaagttca 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 agaaaatgaatgtaccaactcaggaccttgtttttccttttccttaaaatgagaagttca 380
Query: 181 ccattttatttatctcataaaacaaagcccagaatgtagattagatttctgtgctcagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccattttatttatctcataaaacaaagcccagaatgtagattagatttctgtgctcagtg 440
Query: 241 tgcactggggtttcgcaggtctgcactcaga-aggaggattctgatgtgtgaaatcaggc 299
||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||
Sbjct: 441 tgcactggggtttcgcaggtctgcagtcagagag-aggattccaatgtgtgaaatcaggc 499
Query: 300 atacatgctgtcgcctaggaagtaggtttgttgcctgttgtgcctggctcctccctgtgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atacatgctgtcgcctaggaagtaggtttgttgcctgttgtgcctggctcctccctgtgt 559
Query: 360 ggttatgaccctcaccatcctgcacgacactctctgttttgctatgcttcaagatgtgct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggttatgaccctcaccatcctgcacgacactctctgttttgctatgcttcaagatgtgct 619
Query: 420 tggggcctgagga 432
|||||||||||||
Sbjct: 620 tggggcctgagga 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
