BAC Information

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BAC

Clone NameMSMg01-523M06
Chromosome1 (Build37)
Map Location 130,512,580 - 130,512,838
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneLOC100042732, Thsd7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523M06.T7 (MSMg01no523_m06.b1)MSMg01-523M06.TJ (MSMg01no523_m06.g1)
ACCAG594004AG594005
length739789
length of high quality
(start - end)
611 (73 - 683)261 (130 - 390)
definitionCHROMAT_FILE: MSMg01no523_m06.b1 PHD_FILE: MSMg01no523_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:47 2005CHROMAT_FILE: MSMg01no523_m06.g1 PHD_FILE: MSMg01no523_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCATTTACGGAATACTAATTATGGGACTATTCTGGAATCCC
TTATAACCTACAGGATCAGGCTATTGTGGAATAATAATTAAATGGTAAAT
CTTAAAAATAAGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACT
CCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAGCCACATGGTGGCTCA
CAACTATCTATAATGGGATCTGATGCCCTCTTCTAGGGTGTCTGAAGACA
GCTAGAATGTACTTACATATAATAAATAAATAAATATTTAAGAAATAAAT
AAATAAAAGGGGTTATAAACACCCACCTAAGTCTCTTACACAGTATGTGA
CATTTAGCTGTGCTAACTTTAAATTTTTTCACGTTAAAGGGTAATGATTC
TTCTGCTGCCACAAGGGTTTTTGCCCTAATGGAGACACAGTCTAAAGTAT
ATGTTAAATGGAAAGATCTAGAAACTAATCAGTAGAAAATTCCCGATGTT
CTTCTAACATCAGGGTGAGGTTATGCTTATGTCTTTCCAGGAAATGAACA
AAATCTCATACGGTTCCCACTATGATGCATCTGACCAGGGCAACATCCCA
GAGACCACTGATAAAATGTCCAAAAGTGGATATGACAAACCCATCAAAAG
GACCCATCTCTAGATGGAAAGGAAGCTGATAACCTGGGG
GTGGAGGAGGGGAGGAGGAGTGATGAGAGAGGGAGNAGNGAGAGGNGGGA
GCGAAGNNGCATGTAGTGGTAGTCCGGGGCGCCTGATCCGTACTGAGGTG
AACTATAGAAGGTTCGCGAAATTCCTAAGGATGAAGATGAAGACAAGAAC
CCGCCTTACTCCACTGCCATTACCTGTTATTGGCCTCAACTGGTAGCAAT
TGCTTGGGGTCCCTCCCTGCCCCTTCAGACTACTTAAAATGTTAATTTTT
GTTCCTTGGTATCAAACCCAGGGTCTTATCAGGAACAGTAGACATGCATA
ACCACTGAGCTACATTGCAGTGCTCATGTGATTACATGTGTGTGTATATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGNGTGNTTTTT
TNTNTTTTTTTTTTTGTGNNGTGTTGGGGTGGGTTTTTTTTTTTGTTTTT
TTCGGGGTTTTTTTTTTTTTTTTTTTTTGGGGGTTTTTGTTGNTTTTTTG
TTGGGTGTGGTGTTTTTTGGTTTTTTTTTTTTTGGTGTTTTTTTGTGTTT
GTTTGTGTTGTGTTGTTGTTGTGTTGTTTTTTTGTGTTGTGTTTTTTTTT
TTGGTTTTGTTGTTTTGGTTTGTGTCGGTTTTTTGTGGGCGGTTTTTTTT
TTTTTTTTTTTTTTTTTTGTTTTCTTTATTTTTTATTTGTGTTTTTTTCT
TTCGCGTTTTTTTTCTCTTTTTGTCCTCCCTCTACTTTTTGTTTGCTTTC
CCTACCTTCTTTATTTCTACATTTCTTATCTCCTGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_m06.g1 MSMg01no523_m06.g1 CHROMAT_FILE:
MSMg01no523_m06.g1 PHD_FILE: MSMg01no523_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:47 2005
         (261 letters)



>mm_chr1_130512432_130513092
          Length = 661

 Score =  501 bits (259), Expect = e-146
 Identities = 259/259 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgaagatgaagacaagaacccgccttactccactgccattacctgttattggcctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gatgaagatgaagacaagaacccgccttactccactgccattacctgttattggcctcaa 348

                                                                       
Query: 61  ctggtagcaattgcttggggtccctccctgccccttcagactacttaaaatgttaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctggtagcaattgcttggggtccctccctgccccttcagactacttaaaatgttaatttt 288

                                                                       
Query: 121 tgttccttggtatcaaacccagggtcttatcaggaacagtagacatgcataaccactgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgttccttggtatcaaacccagggtcttatcaggaacagtagacatgcataaccactgag 228

                                                                       
Query: 181 ctacattgcagtgctcatgtgattacatgtgtgtgtatatgtgtgtgtgtgtgtgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ctacattgcagtgctcatgtgattacatgtgtgtgtatatgtgtgtgtgtgtgtgtgtgt 168

                              
Query: 241 gtgtgtgtgtgtgtgtgtg 259
           |||||||||||||||||||
Sbjct: 167 gtgtgtgtgtgtgtgtgtg 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)