Query= MSMg01no523_p18.b1 MSMg01no523_p18.b1 CHROMAT_FILE:
MSMg01no523_p18.b1 PHD_FILE: MSMg01no523_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:05 2005
(619 letters)
>mm_chr1_38109979_38110998
Length = 1020
Score = 1118 bits (578), Expect = 0.0
Identities = 618/650 (95%), Gaps = 31/650 (4%)
Strand = Plus / Minus
Query: 1 gaccttgctcaaagagtggatcactactatctcaggtttgtgtggtagctctgtgattcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaccttgctcaaagagtggatcactactatctcaggtttgtgtggtagctctgtgattcg 682
Query: 61 agaacaggacctgagcacaatggctcgagccccttgtctaacattacaagctgtaaggcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaacaggacctgagcacaatggctcgagccccttgtctaacattacaagctgtaaggcg 622
Query: 121 tgctgggtcctcacctggggttttcctcctccctagatccgatggaagaagacatcctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctgggtcctcacctggggttttcctcctccctagatccgatggaagaagacatcctgc 562
Query: 181 aggttgtgagatactgcactgacctcatagaggagaaagacttggaaaaattggatctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggttgtgagatactgcactgacctcatagaggagaaagacttggaaaaattggatctgg 502
Query: 241 ttataaaatacatgaaaaggtaatttatttaattttttacttaaagagg-aaaaaaaaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ttataaaatacatgaaaaggtaatttatttaattttttacttaaagaggaaaaaaaaaaa 442
Query: 300 gcatgtcccaacagtcaattgagggcatatggatagaacaggtttttaaggttcctggtt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatgtcccaacagtcaattgagggcatatggatagaacaggtttttaaggttcctggtt 382
Query: 360 ttaaatgccatataataatgttgacaggaatactaagttaaaaataatcactcccatggt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaatgccatataataatgttgacaggaatactaagttaaaaataatcactcccatggt 322
Query: 420 tatatgtccaatacacaagtgaccatgaaatgtttctgagtgccctaataggccttttaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatgtccaatacacaagtgaccatgaaatgtttctgagtgccctaataggccttttaa 262
Query: 480 accaagtttattttcttaacacttggttttactgtctgggctggcctttaaattcagtg- 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 accaagtttattttcttaacacttggttttactgtctgggctggcctttaaactcagtgg 202
Query: 539 ------------------gccactgtatccagttca-----------aaaaaaaaaacca 569
|||||||||||||||||| |||||||||||||
Sbjct: 201 ctgagattaaaggcgtgagccactgtatccagttcaaaaaaaaaaagaaaaaaaaaacca 142
Query: 570 agaatgaagctaagtctgaaggacaaccatgcgtgctggagctttctctt 619
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agaatgaagctaagtctgaaggacaaccatgcgtgctggagctttctctt 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_p18.g1 MSMg01no523_p18.g1 CHROMAT_FILE:
MSMg01no523_p18.g1 PHD_FILE: MSMg01no523_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:05 2005
(592 letters)
>mm_chr1_37929004_37929992
Length = 989
Score = 1067 bits (552), Expect = 0.0
Identities = 581/592 (98%), Gaps = 3/592 (0%)
Strand = Plus / Plus
Query: 1 tttgcgggttgtagaggcacaagctgagcaggagtgggtgctgcagagagcacgcgtgcg 60
|||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tttgcgggttgtggaggcacacgctgagcaggagtgggtgctgcggagagcacgcgtgcg 260
Query: 61 tcccatgggcccctcctattggttctgaaagctctgcagattacacctggtgctccggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccatgggcccctcctattggttctgaaagctctgcagattacacctggtgctccggac 320
Query: 121 gccgtaatttcattattgggaacagttgatttctaatacggcgtagggtaaactaaacaa 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 g---taatttcattattgggaacagttgatttctaatacggcgtagggtaaactaaacaa 377
Query: 181 gacattcagtgctagtcgcgtgcctgttcccgaagagtaaagcttgcttaaaagttcgta 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 378 gacattcagtgctagtcgcgtgcctgctcccgaagagtaaagcttgcttaaaagttcgta 437
Query: 241 atcacttccaggtttggatcgcgttattaggaggatagcaaatagttttggtaaggcctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atcacttccaggtttggatcgcgttattaggaggatagcaaatagttttggtaaggcctt 497
Query: 301 gtgaggaaggtaggcctttagttaggtcttgctttacaatctgtcagggagaagcatgtg 360
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 498 gtgaggaaggtaggcctgtagttaggtcttgctttacactctgtcagggagaagcatgtg 557
Query: 361 ttggcagttgcagaagtgtctcccagagcatggaagtaagagcctcctgaggaaataatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttggcagttgcagaagtgtctcccagagcatggaagtaagagcctcctgaggaaataatt 617
Query: 421 ataacaccagtaatgaagatgaaagcagagagctgggggtggattgctcggcggtgcagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 618 ataacaccagtaatgaagatgaaagcagagagctgggggtggattgctcggcggtacagt 677
Query: 481 tcaaacctagactgagtgagttccatcccttgctcagctaaagctgttaaaatagagtgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcaaacctagactgagtgagttccatcccttgctcagctaaagctgttaaaatagagtgt 737
Query: 541 agttgggtgtatcaaccacatcctagcccaggcgcctacagaggagtaggtg 592
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agttgggtatatcaaccacatcctagcccaggcgcctacagaggagtaggtg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 989
Length adjustment: 10
Effective length of query: 582
Effective length of database: 979
Effective search space: 569778
Effective search space used: 569778
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
