Query= MSMg01no524_d10.b1 MSMg01no524_d10.b1 CHROMAT_FILE:
MSMg01no524_d10.b1 PHD_FILE: MSMg01no524_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:25 2005
(648 letters)
>mm_chr1_42716778_42717825
Length = 1048
Score = 1226 bits (634), Expect = 0.0
Identities = 643/648 (99%), Gaps = 4/648 (0%)
Strand = Plus / Minus
Query: 5 gaattcctctgacctctgaggtgaggagattctctcacctcagcctccgcgtccctagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gaattcctctgacctctgaggtgaggagattctctcacctcagcctccgcgtccctagaa 771
Query: 65 gttggtaccctgaattgacagcaccacatctgacttaaaaaaataattaattttttaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gttggtaccctgaattgacagcaccacatctgacttaaaaaaataattaattttttaaag 711
Query: 125 caatggcgccctcccatctagcagaatgcacagtaggtgtgcatagcctccattttatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 caatggcgccctcccatctagcagaatgcacagtaggtgtgcatagcctccattttatat 651
Query: 185 gccattgtaaggatgagttctgtttgaaacctacagagcaaagcacacgtatgtggttca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gccattgtaaggatgagttctgtttgaaacctacagagcaaagcacacgtatgtggttca 591
Query: 245 aacctataatctggcagggtgagaacagaaggtactgactgaggaggcataagttaccct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aacctataatctggcagggtgagaacagaaggtactgactgaggaggcataagttaccct 531
Query: 305 ttgccagacaatagacggagaaaggagtaaggaggagtgggaaagggtccaggtggaaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttgccagacaatagacggagaaaggagtaaggaggagtgggaaagggtccaggtggaaag 471
Query: 365 gtcgatgactttgggagcatcgagggaaggaggcaaggttagagaatggcaattggacgg 424
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 470 gtcgatgactttgggagcatcgagggaaggaggtaaggttagagaatggcaattggacgg 411
Query: 425 tagatctagcaggaaggggtgaacatagagataggaagctaagattctgggaggtataca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tagatctagcaggaaggggtgaacatagagataggaagctaagattctgggaggtataca 351
Query: 485 aggcaggctacccctcagaaccatgtgagaaagagagagagggagaaagaaagaaggaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aggcaggctacccctcagaaccatgtgagaaagagagagagggagaaagaaagaaggaaa 291
Query: 545 ggagagaggaagggaagaaggaaggaag----aaagagatggcatctgtcaatatctagt 600
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 290 ggagagaggaagggaagaaggaaggaaggaagaaagagatggcatctgtcaatatctagt 231
Query: 601 caatcccggtatgatatgggcagtaggaatgtttatgggtaggaaggt 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 caatcccggtatgatatgggcagtaggaatgtttatgggtaggaaggt 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_d10.g1 MSMg01no524_d10.g1 CHROMAT_FILE:
MSMg01no524_d10.g1 PHD_FILE: MSMg01no524_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:25 2005
(649 letters)
>mm_chr1_42539207_42540255
Length = 1049
Score = 1156 bits (598), Expect = 0.0
Identities = 638/657 (97%), Gaps = 10/657 (1%)
Strand = Plus / Plus
Query: 1 aggactgaggaaatggtttaatcaagcctgcctcacaagcataaggacttgaactcattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aggactgaggaaatggtttaatcaagcctgcctcacaagcataaggacttgaactcattt 254
Query: 61 tctcccacagactcttcacagtcctgtcatagaacaggacagcatgctctctcctaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tctcccacagactcttcacagtcctgtcatagaacaggacagcatgctctctcctaagta 314
Query: 121 gcttttgatcattcttcactgagcagctgaaatgcaccatcagtgtctggatcctttgga 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gcttttgttcattcttcactgagcagctgaaatgcaccatcagtgtctggatcctttgga 374
Query: 181 taaagatatgtaggcaaatatgaggaagatgttctttcttaccttggcaagtaaaatata 240
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 375 taaagatatgtaggcaaatatgaggaagatattctttcttaccttggcgtgtaaaatata 434
Query: 241 aggtagccgacaggggtcagagcactctgctccaggcttgattcagaagccatgtgactg 300
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 435 aggtagccgacaggggccagagcactctgctccaggcttgattctgaagccatgtgactg 494
Query: 301 aatgaggactaggaaatggtatgaaataatacaaaaaaaa--------ggcacaacacac 352
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 495 aatgaggactaggaaatggtatgaaataatacaaaaaaaaaaaaaaaaggcacaacacac 554
Query: 353 acacacacacaccccagaagtaattgggatggtaggctgttctaggaagtgcaatgtagg 412
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acacacacac--cccagaagtaattgggatggtaggctgttctaggaagtgcaatgtagg 612
Query: 413 tgttaggaactgaacctgggggtctcctggattgaataataaatgctcttaatcactgaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgttaggaactgaacctgggggtctcctggattgaataataaatgctcttaatcactgaa 672
Query: 473 ctatttctccaaattttaccccaagaagtaacctttttgtatgtctactaaataggaaga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctatttctccaaattttaccccaagaagtaacctttttgtatgtctactaaataggaaga 732
Query: 533 aggaggtgagagatttgaaaagaggaaagaacattagctcaagagaagagagcatgtgca 592
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 733 aggaggtgagagatttgaaaagaggaaagaacattagctcaagagaagaaagcatgtgca 792
Query: 593 tccctcggcatctganagcagaaaagttactggaataacagataatacaactggcca 649
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 793 tccctcggcatctgaaagcagaaaagttcctggaataacagataatacaactggcca 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
