Query= MSMg01no524_g14.b1 MSMg01no524_g14.b1 CHROMAT_FILE:
MSMg01no524_g14.b1 PHD_FILE: MSMg01no524_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:41 2005
(606 letters)
>mm_chr1_154529412_154530417
Length = 1006
Score = 832 bits (430), Expect = 0.0
Identities = 464/482 (96%), Gaps = 12/482 (2%)
Strand = Plus / Minus
Query: 133 actccaaacccatagtgtggcatgatgaagggcagcaaagacagctaccggga------- 185
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 actccaaagccatagtgtggcatgatgaagggcagcaaagacagctaccgggatgtgtgt 947
Query: 186 -tatgtgtgtgtgtgtgtgtgtgtgtgtgtatggacatcagaggacttcttgccagagtc 244
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggacatcagaggacttcttgccagagtc 887
Query: 245 gattctttccttctgctgtgcgtgtcccagggatcaagttggggtcatctggcttggcag 304
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gattctttccttctgctatgcgtgtcccagggatcaagttggggtcatctggcttggcag 827
Query: 305 caagtctcttcacccactgaggcatcttgccagcctggagctcagagttttgacatccgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 826 caagtctcttcacccactgaggcatcttgccagcctggagctcagagttttgacatctgc 767
Query: 365 atgacactcttctgtgaatagcacattggctctgtgaggggagctggagtggagaggtga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 atgacactcttctgtgaatagcacattggctctgtgaggggagctggagtggagaggtga 707
Query: 425 ggctctgggtcagacacttcccctgtcgctgaggtgacacttgtgaggtattagtccagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggctctgggtcagacacttcccctgtcgctgaggtgacacttgtgaggtattagtccagt 647
Query: 485 gcctgtggggtggtcatatggtccatgtcactgtcagagctgttgagacctcagaagact 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 646 gcctgtggggtggtcatatggtccatgtcactgtcagagctgttgagacctcagaagaat 587
Query: 545 ggctctcacttcaacgtggacaggaaaaagaaagccgactgctggtgcgcccgccgcgtc 604
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 586 ggctctcacttcaacgtggacaggaaaaagaaagccgactgctggtgtgcc----gcgtc 531
Query: 605 tg 606
||
Sbjct: 530 tg 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_g14.g1 MSMg01no524_g14.g1 CHROMAT_FILE:
MSMg01no524_g14.g1 PHD_FILE: MSMg01no524_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:41 2005
(642 letters)
>mm_chr1_154365416_154366457
Length = 1042
Score = 1156 bits (598), Expect = 0.0
Identities = 634/654 (96%), Gaps = 18/654 (2%)
Strand = Plus / Plus
Query: 1 tctccctttac-aaaataagagcctgggcttgtaatactggcatgaagaacactccgcat 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tctccctttacaaaaataagagcctgggcttgtaatactggcatgaagaacactccgcat 254
Query: 60 tggtag------ttctatttacttggaagtatgagaccaggttcttggtcccttctgttt 113
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tggtagttctaattctatttacttggaagtatgagaccaggttcttggtcccttctgttt 314
Query: 114 ccctgtaaaaagtgacctcaacttcccaggccattgtgtgcaaattggtttttccatagt 173
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 315 ccctgtaaaaagtgacctcaacttcccaggccat--tgtgcaaattggtttttccatagt 372
Query: 174 ccagaatatcctgtatagtccctctggtatatctacatacacacacacacacacacacac 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccagaatatcctgtatagtccctctggtatatctacatacacacacacacacacacacac 432
Query: 234 acacacatacacacacatacatacac-----cacacacgatatgtgtgtgtatatatatt 288
|||||| ||||||||| || |||| ||||||||||||| |||||||||||||||
Sbjct: 433 acacac--acacacacaaac--acacgcatacacacacgatatgcgtgtgtatatatatt 488
Query: 289 ttaaaatatggactattttgtattcactctcagatctaagagcatcagtgaaccttttat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttaaaatatggactattttgtattcactctcagatctaagagcatcagtgaaccttttat 548
Query: 349 ccttttaatgtcaaattcacttccactctcccctgcacagtgctctctgcacagctgaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ccttttaatgtcaaattcacttccactctcccctgcacagtgctctctgcacagctgaat 608
Query: 409 tctataaatatctgtcgctttcaccaatgatgctcaacactgggtggtggttggcgtcgc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tctataaatatctgtcgctttcaccaatgatgctcaacactgggtggtggttggcgtcgc 668
Query: 469 catggcttttgctcagcctcactctgccttgggcagtaggagtgtactgtccctttcaga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 catggcttttgctcagcctcactctgccttgggcagtaggagtgtactgtccctttcaga 728
Query: 529 gggtgatcttgctgtgcctgttactccagcagccccgcttagctgtcctgggcaaagtca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gggtgatcttgctgtgcctgttactccagcagccccgcttagctgtcctgggcaaagtca 788
Query: 589 ggctggtccgactgcgcaacttcacctgctcctccaccgagttctttttgcgta 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ggctggtccgactgcgcaacttcacctgctcctccaccgagttctttttgcgta 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
