Query= MSMg01no524_j02.b1 MSMg01no524_j02.b1 CHROMAT_FILE:
MSMg01no524_j02.b1 PHD_FILE: MSMg01no524_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:53 2005
(622 letters)
>mm_chr1_128995886_128996908
Length = 1023
Score = 1145 bits (592), Expect = 0.0
Identities = 613/620 (98%), Gaps = 1/620 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttaccccagtctctcctgccatggtggctgttggcattaagtgacctgatcac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 823 ggaattcttaccccagtctctcctgccatggtggctgttggcattaagtgacccgatcac 764
Query: 64 cagaaatatgtcccagtgcctatctacacaaaaccagctcttgcagccagccatttccac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 cagaaatatgtcccagtgcctatctacacaaaaccagctcttgcagccagccatttccac 704
Query: 124 tcttacttaataatgtgggcatgcacaatctgacacacctgcacagaaatagaagacaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcttacttaataatgtgggcatgcacaatctgacacacctgcacagaaatagaagacaac 644
Query: 184 ctt-gggggtgggtcctcacctttaggacagtgtttcttgttggttactgctgtatacat 242
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 643 cttggggggtgggtcctcacctttaggacagtgtttcttgttggtcactgctgtatacat 584
Query: 243 tggttagctggtctctgggctttcatagattctcctaggcccacctcccaccccacacta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tggttagctggtctctgggctttcatagattctcctaggcccacctcccaccccacacta 524
Query: 303 agagctttgggattacagatggatgcttccttgtctggctttccctggcttctcaaagct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agagctttgggattacagatggatgcttccttgtctggctttccctggcttctcaaagct 464
Query: 363 ctttacccacaggcctattacaaccatttaaaaggcttgtgaccaggaacagttttgctt 422
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctttacccacagccctattacaaccatttaaaaggcttgtgaccaggaacagttttgctt 404
Query: 423 ggagtctgtatttggcctgcatctgtagagtcatgatcttattagaacttctgcttagta 482
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 403 ggagtctgtatttggcgtgcatctgtagagtcatgatcctattagaacttctgcttagta 344
Query: 483 tatagttcgtgagccacatggaaaattcagctgagatctaaatgaactgactctttcttt 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 343 tatagttcgtgagccacatggaaaattcagctgagatctaaatgaactggctctttcttt 284
Query: 543 ctgagacttttctagtttctaaaagcaaggataattcactatcaaccttgtcagtttgat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctgagacttttctagtttctaaaagcaaggataattcactatcaaccttgtcagtttgat 224
Query: 603 ttcatggaaattacccttag 622
||||||||||||||||||||
Sbjct: 223 ttcatggaaattacccttag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1023
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1013
Effective search space: 619956
Effective search space used: 619956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_j02.g1 MSMg01no524_j02.g1 CHROMAT_FILE:
MSMg01no524_j02.g1 PHD_FILE: MSMg01no524_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:53 2005
(609 letters)
>mm_chr1_128869445_128870455
Length = 1011
Score = 913 bits (472), Expect = 0.0
Identities = 494/502 (98%), Gaps = 2/502 (0%)
Strand = Plus / Plus
Query: 1 cacccttgggagggatatctttcagaaagcaggtgtaaaggctgtaagactgcagtaagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cacccttgggagggatatctttcagaaagcaggcgtaaaggctgtaagactgcagtaagg 260
Query: 61 ccttccaaag--cagtctttaaaaagaaagtataggaaaggggagcaatgggttgcttta 118
|||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ccttccaaagcacagtcattaaaaagaaagtataggaaatgggagcaatgggttgcttta 320
Query: 119 aaaatcaaaataaggaaaatactaagcctcacaagtaaaagaaaggaatatggagacact 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatcaaaataaggaaaatactaagcctcacaagtaaaagaaaggaatatggagacact 380
Query: 179 atcggcgcctgcagtaaagacagagattcctatatggggctggcaacagatgaatgaggc 238
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attggcgcctgcagtaaagacagagattcctatatggggctggcaacagatgaatgaggc 440
Query: 239 attccccgcggagaaaagtgcttagcagagctctaggcacaagaacagctgagagttggc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attccccgcggagaaaagtgcttagcagagctctaggcacaagaacagctgagagttggc 500
Query: 299 atgtttgggatcctggggcgtaattaccttctatttttaatgaaacatcaataaactctg 358
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 atgtttgggatcctggggcgtaattaccttctattttttatgaaacatcaataaactctg 560
Query: 359 tgcattcagtaatctagcatgagcggtgcattgtcaaggagagagaaggcagctgaccca 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 tgcattcagtaatctagcatgagcggtgcattgtcaaggagagggaaggcagctgaccca 620
Query: 419 ctcaagcaggcaaacaaacaacctggatctttgaggaccaggcagaatccttgcatccct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcaagcaggcaaacaaacaacctggatctttgaggaccaggcagaatccttgcatccct 680
Query: 479 gagggccaggcagcctcctagc 500
||||||||||||||||||||||
Sbjct: 681 gagggccaggcagcctcctagc 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1011
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1001
Effective search space: 599599
Effective search space used: 599599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
