XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATTC
TATGAACATGGTTTCAAAAGAATCATTTCTGATCTCCATGTACTTACATC
AAATGGCGAACTGCCAGTATTAAAGGCCAAATAAACTCTTGTTATGACAA
TGTGCAAACTTAAGCTTTGCTAGCATTTAAATGGAAAAGGGTTAGAAAGG
AGATGAGTCCAGGCAATGCTTGGATTCACTGATTTACACTGAAAAAAAAT
GGATGCCTTTCAGGTGGGAGGGATGTTTGGTCTTTGAGATGTTGGCAACC
TAGCCTAGGACATAATGCATGCTAGGCAATGGCTCTTCCACTGAGCAGTA
TTCTCATCATGTGATATTGAAGAAAAATGACTAGTGGCTGGAGAGATGGC
TCAGTGGTTAAGAACACCTGCTGCTCTCCCAGAGGACCATGGCTTGATTC
TCAGCGCCCATTTGGTAGCTCACAACTGTCTATAACTCCAGCACAAGGAG
CCAGTTTCCTCATCTTGCCTTTGTGAACACCAAAAACATACCCAGTACAC
AGATATATATGCAGGCAAAAACCCATGCACATAAAATGAAAATAAATACA
TTTTTAAAATGTCTTTTTTTATAGAAAAATATATGCATGCACAATGAAAA
AGCATTTGAGTCACAATCATTTTAAGTAAGTTGATTTTCAAGTGTCTGAC
TATCAGGAGGAACAAAGTTATGAAATTTCATATTTATAATCTAATAGTAA
CTTAATAGCCTTAAAA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATAT
GCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGACT
GGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTC
TGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAG
TTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTG
TTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCA
GTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGT
ACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAA
ACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCATT
TGTCTGGAGTCGAAGATGTCGCCGCCTCAGAAGCTCTGTGGCTCTTGTCC
GGAAGGAGGCCGGCCGTCTGGAGCTGAGGTTGGCGCCGCCTCAGAAGCTC
TGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGCGC
CGCCCCAGAATCTCTGCGACTCTCTTGCCCGTCCCAGAAACGGCTGGCAC
TCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGTGGAGTTCGGA
GCC

Query= MSMg01no524_n02.b1 MSMg01no524_n02.b1 CHROMAT_FILE:
MSMg01no524_n02.b1 PHD_FILE: MSMg01no524_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:12 2005
         (674 letters)



>mm_chr1_16354577_16355650
          Length = 1074

 Score = 1272 bits (658), Expect = 0.0
 Identities = 667/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattctatgaacatggtttcaaaagaatcatttctgatctccatgtacttacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattctatgaacatggtttcaaaagaatcatttctgatctccatgtacttacat 264

                                                                       
Query: 65  caaatggcgaactgccagtattaaaggccaaataaactcttgttatgacaatgtgcaaac 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 caaatggcgaactgccagtattaaaggccaaataaacccttgttatgacaatgtgcaaac 324

                                                                       
Query: 125 ttaagctttgctagcatttaaatggaaaagggttagaaaggagatgagtccaggcaatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaagctttgctagcatttaaatggaaaagggttagaaaggagatgagtccaggcaatgc 384

                                                                       
Query: 185 ttggattcactgatttacactgaaaaaaaatggatgcctttcaggtgggagggatgtttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggattcactgatttacactgaaaaaaaatggatgcctttcaggtgggagggatgtttg 444

                                                                       
Query: 245 gtctttgagatgttggcaacctagcctaggacataatgcatgctaggcaatggctcttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 gtctttgagatgttggcaacctagcctaggacataatgcatgctaggcaatggctctccc 504

                                                                       
Query: 305 actgagcagtattctcatcatgtgatattgaagaaaaatgactagtggctggagagatgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actgagcagtattctcatcatgtgatattgaagaaaaatgactagtggctggagagatgg 564

                                                                       
Query: 365 ctcagtggttaagaacacctgctgctctcccagaggaccatggcttgattctcagcgccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcagtggttaagaacacctgctgctctcccagaggaccatggcttgattctcagcgccc 624

                                                                       
Query: 425 atttggtagctcacaactgtctataactccagcacaaggagccagtttcctcatcttgcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttggtagctcacaactgtctataactccagcacaaggagccagtttcctcatcttgcc 684

                                                                       
Query: 485 tttgtgaacaccaaaaacatacccagtacacagatatatatgcaggcaaaaacccatgca 544
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 685 tttgtgaacaccaaaaacatacccagtacacagacatatatgcaggcaaaaacccatgca 744

                                                                       
Query: 545 cataaaatgaaaataaatacatttttaaaatgtctttttttatagaaaaatatatgcatg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cataaaatgaaaataaatacatttttaaaatgtctttttttatagaaaaatatatgcatg 804

                                                                       
Query: 605 cacaatgaaaaagcatttgagtcacaatcattttaagtaagttgattttcaagtgtctga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cacaatgaaaaagcatttgagtcacaatcattttaagtaagttgattttcaagtgtctga 864

                     
Query: 665 ctatcaggag 674
           ||||||||||
Sbjct: 865 ctatcaggag 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)