BAC Information

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BAC

Clone NameMSMg01-524P09
Chromosome1 (Build37)
Map Location 186,125,843 - 186,126,400
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666649, 1700056E22Rik, Dusp10
Downstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524P09.T7 (MSMg01no524_p09.b1)MSMg01-524P09.TJ (MSMg01no524_p09.g1)
ACCAG594913AG594914
length737740
length of high quality
(start - end)
624 (41 - 664)610 (71 - 680)
definitionCHROMAT_FILE: MSMg01no524_p09.b1 PHD_FILE: MSMg01no524_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:24 2005CHROMAT_FILE: MSMg01no524_p09.g1 PHD_FILE: MSMg01no524_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCACATTCTT
CTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTCTCTATACCAGTACCATGTAGTTTTTATCACAATTGCTCTGTA
GTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCT
TGAGAAAAGTTTTGCTATCCTCGGTTTTTTGTTATTC
ATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGAAGAGGCGCAGCTGAAATGGAAGACG
GATAGCTGTGAGCGAAACAGTGCAGGTGTGAGAACAATACGTTCTGTCTG
AGCTGTGCAGCACGTGCTGGAAGTGGGAAGTGAATCAGTTGGCTAACGTT
GGTCTTCATAGTCTACAAGACGCTGGACTTGAGCCTGGCATAACTTCTTA
TGCCTGCATCTGTGTAAGAATGGGTGGAAGGTGGCAAACTCCTGTATCAG
AAAGAATGTCTCATACCATGGAAGCTTCTACTGTTACTTGGTAGGCCTAG
GTCACTCTGTCAGTATAACCCCCTAGGAAGAAGGCTTGGCCACCTTTCTC
TACAGCTTCCTCCCGCGCATAATGGCATCTAGCTTTCCCAATTGAGGGTG
GCTTTGTCCTTTCTTTCTTGTGCCTCATCTGTCCATGGTTCTCTATGGAC
CATCGGTGTCACCATGAGGCTGCCATCTGCAAGTAAATTCATGCCCACTC
TCCTGATCTGTAGCCTGAGACAGGGATGCCTATGCAGTGACTCTCCCAGC
TTCCAGAGCTAGTAAGTGCTACAGACCAGAAACACTTAGACCAGAAACTT
ACAGTGAGCCCTTGGATTACACAGAAAGTTAATATAGTGACCTCATTGTC
AGTAGTCTCTGAATTGCTATTGTCTCTTCACTCACTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_p09.g1 MSMg01no524_p09.g1 CHROMAT_FILE:
MSMg01no524_p09.g1 PHD_FILE: MSMg01no524_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:24 2005
         (610 letters)



>mm_chr1_186125389_186126400
          Length = 1012

 Score =  917 bits (474), Expect = 0.0
 Identities = 540/568 (95%), Gaps = 13/568 (2%)
 Strand = Plus / Minus

                                                                        
Query: 46   aacagtgcaggtgtgagaacaatacgttctgtctgagctgtgcagcacgtgctggaagtg 105
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1012 aacagtgcaggtgtgagaacaatacgttccgtctgagctgtgcagcacgtgctggaagtg 953

                                                                        
Query: 106  ggaagtgaatcagttggctaacgttggtcttcatag-tctacaagacgctggacttgagc 164
            |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 952  ggaagtgaatcagttggctaacgttggtcttcat-gttctacaagacgctggacttgagc 894

                                                                        
Query: 165  ctggcataacttcttatgcctgcatctgtgtaagaatgggtggaaggtggcaaactcctg 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  ctggcataacttcttatgcctgcatctgtgtaagaatgggtggaaggtggcaaactcctg 834

                                                                        
Query: 225  tatcagaaagaatgtctcataccatggaagcttctactgttacttggtaggcctaggtca 284
            ||||||||||||| |||||||         ||||||||||||||||||||||||||||||
Sbjct: 833  tatcagaaagaatttctcata---------cttctactgttacttggtaggcctaggtca 783

                                                                        
Query: 285  ctctgtcagtataaccccctaggaagaa--ggcttggccacctttctctacagcttcctc 342
            ||||||||||| || |||||||||||||  ||||||||||||||||||||||||||||| 
Sbjct: 782  ctctgtcagtacaaacccctaggaagaactggcttggccacctttctctacagcttcctt 723

                                                                        
Query: 343  ccgcgcataatggcatctagctttcccaattgagggtggctttgtcctttctttcttgtg 402
            | | ||| |||||||||||||||| ||| |||| ||||||| |||||||||||||||| |
Sbjct: 722  ctgtgcacaatggcatctagctttaccagttgaaggtggctgtgtcctttctttcttgag 663

                                                                        
Query: 403  cctcatctgtccatggttctctatggaccatcggtgtcaccatgaggctgccatctgcaa 462
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  cctcagctgtccatggttctctatggaccatcggtgtcaccatgaggctgccatctgcaa 603

                                                                        
Query: 463  gtaaattcatgcccactctcctgatctgtagcctgagacagggatgcctatgcagtgact 522
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  gtaaattcatgtccactctcctgatctgtagcctgagacagggatgcctatgcagtgact 543

                                                                        
Query: 523  ctcccagcttccagagctagtaagtgctacagaccagaaacacttagaccagaaacttac 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  ctcccagcttccagagctagtaagtgctacagaccagaaacacttagaccagaaacttac 483

                                        
Query: 583  agtgagcccttggattacacagaaagtt 610
            ||||||||||||||||||||||||||||
Sbjct: 482  agtgagcccttggattacacagaaagtt 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1012
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1002
Effective search space:   601200
Effective search space used:   601200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)