XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCATATTTAGGGGCTTGGCTTAAATGAGTTATGGACCTTTCCTATAAGG
AGACAAAGAATACAGCAATCATAGTCAGAATTCATGTCAGTCTTATCTTT
ATCAGTTTAGAGAACCTTGTGTTGAGCCATCTATCATTTTCCTCTGTAGC
CTTCTTCATCTGGATATGATATATCCATGAGGTGATACTGGCAACCTTCA
TAGCTATATGCATGGTAAGAAAAACAGGGCATGGACCTTTTATTTTGACT
CCAGATTCCTGTTTTGATGCCATTTACCTATATAAGGTCAGGCTGTAATC
AATGGGAAGTCTAAGAAACGAGAAAGGGCATGGCCTTTTGAACTGATTGA
TGAATCGTCTTCTGTTTCTGTTGCCGTACCTGTAAGGATTTGAGAAGTAG
TGATCAGTAATTTCTACTTATAGACATCTCTTAGAATAGGGACAGGAGAA
GGAGGTCGCTCTAGATTTTAAATTAGTGTTCTGAGATTTTTCCACTTATT
GTAAAGCTACTTATACTTTTGTTCCATAGAGCCTTCATTATATTGACATA
TATTTATTTATTTTACTTTCTCATAAAGGATTCTGGACTTTTCTAAATGT
CTTTTTGAAGAAAATGAGAGAACCATGTATAGTTATGAGGCCCTCCATAT
ATAGCAGAAAACTACTGCGTCTGGGTCCAGTGAG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTCTCCAATAATTTTAACATGAAAGGA
TGTTTTAGCTTATCAAGTGCTTTTCAGCATCTAATGAGATGATCATATGA
TTCTTTTGTTTGAGTTTGTTTATATAGAGGATTCCATTAATAGATTGTCA
TATATTGGGATAACCTTGAATCATTGGCATGAAGCCAAATTGATCGTAGT
GAATGATAGTTTTGATGCGTTCTTGGATTCAGTTTATTGAGTATTTTTGC
ATTGATATCTATAGAGAAATTGGTCTGAAGTTTTCTTTTTTGTTGAGTCC
TTTCGTGGTTTAGGTATCAGAATAATTTTGGCTTTATAGAATGAGATAGG
TAATGTTCCTTCTGTTTTTTTGGTTTTTTTTTTTGGGGGGGGTAATCATT
AAAATTTCCTTGACAATACAACAAGGGCACCAAGGGCACCTAGTGCTATG
AATTTTCCTCTTAACACTACTTCATTGTGTCCCATATGTTTGGGAATGCT
GTGTCATCATTTCCTTTGAGTTGCATGAAGGCTTTAATTTCTTTATTTCT
TCCTTGACCAAGTTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGNTGNTGNTNNNNNNNTNNTTTTTTTTTTTTTTNNTTTNNTTTTTTT
TNNTTTTTTTTTNTNTTTTTTTTTTTTTT

Query= MSMg01no525_a02.b1 MSMg01no525_a02.b1 CHROMAT_FILE:
MSMg01no525_a02.b1 PHD_FILE: MSMg01no525_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:27 2005
         (693 letters)



>mm_chr1_116816797_116817889
          Length = 1093

 Score = 1301 bits (673), Expect = 0.0
 Identities = 685/689 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccatatttaggggcttggcttaaatgagttatggacctttcctataaggagaca 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gaattcccatatccaggggcttggcttaaatgagttatggacctttcctataaggagaca 783

                                                                       
Query: 65  aagaatacagcaatcatagtcagaattcatgtcagtcttatctttatcagtttagagaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aagaatacagcaatcatagtcagaattcatgtcagtcttatctttatcagtttagagaac 723

                                                                       
Query: 125 cttgtgttgagccatctatcattttcctctgtagccttcttcatctggatatgatatatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cttgtgttgagccatctatcattttcctctgtagccttcttcatctggatatgatatatc 663

                                                                       
Query: 185 catgaggtgatactggcaaccttcatagctatatgcatggtaagaaaaacagggcatgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 catgaggtgatactggcaaccttcatagctatatgcatggtaagaaaaacagggcatgga 603

                                                                       
Query: 245 ccttttattttgactccagattcctgttttgatgccatttacctatataaggtcaggctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ccttttattttgactccagattcctgttttgatgccatttacctatataaggtcaggctg 543

                                                                       
Query: 305 taatcaatgggaagtctaagaaacgagaaagggcatggccttttgaactgattgatgaat 364
           ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 542 taatcaatgggaaatctaagaaacgagaaagggcaaggccttttgaactgattgatgaat 483

                                                                       
Query: 365 cgtcttctgtttctgttgccgtacctgtaaggatttgagaagtagtgatcagtaatttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cgtcttctgtttctgttgccgtacctgtaaggatttgagaagtagtgatcagtaatttct 423

                                                                       
Query: 425 acttatagacatctcttagaatagggacaggagaaggaggtcgctctagattttaaatta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acttatagacatctcttagaatagggacaggagaaggaggtcgctctagattttaaatta 363

                                                                       
Query: 485 gtgttctgagatttttccacttattgtaaagctacttatacttttgttccatagagcctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtgttctgagatttttccacttattgtaaagctacttatacttttgttccatagagcctt 303

                                                                       
Query: 545 cattatattgacatatatttatttattttactttctcataaaggattctggacttttcta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cattatattgacatatatttatttattttactttctcataaaggattctggacttttcta 243

                                                                       
Query: 605 aatgtctttttgaagaaaatgagagaaccatgtatagttatgaggccctccatatatagc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aatgtctttttgaagaaaatgagagaaccatgtatagttatgaggccctccatatatagc 183

                                        
Query: 665 agaaaactactgcgtctgggtccagtgag 693
           |||||||||||||||||||||||||||||
Sbjct: 182 agaaaactactgcgtctgggtccagtgag 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)