BAC Information

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BAC

Clone NameMSMg01-525B09
Chromosome1 (Build37)
Map Location 155,564,596 - 155,717,407
singlet/doubletdoublet
Overlap geneRgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik
Upstream geneEG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8
Downstream geneEG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525B09.T7 (MSMg01no525_b09.b1)MSMg01-525B09.TJ (MSMg01no525_b09.g1)
ACCAG595009AG595010
length744772
length of high quality
(start - end)		670 (40 - 709)411 (71 - 481)
definitionCHROMAT_FILE: MSMg01no525_b09.b1 PHD_FILE: MSMg01no525_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:34 2005CHROMAT_FILE: MSMg01no525_b09.g1 PHD_FILE: MSMg01no525_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,564,596 - 155,565,262)(155,717,066 - 155,717,407)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ACACATTGTAGCTCGGCATTAAAGCTCTGGCTTTGATTTCTTCCTCAACT
TATGTTTCATGGTTTCTTCTACCTTTCAAATATTTATTTCTATTTCTATT
TGTGTATATGCCATGTATGTGCAGGTGGTCATGGAGACCAGAGGAGGGCA
TTGGATCCTTTGGAGCTGGAATTGTGGGCAACTGAAAACCACTTTATAGG
GTGCTGCGAAAAGAACTGAGGTCCCGTGGAAGAGCAGTCAGCACTTTTAA
CTGCTGAGCCAGCTAGCTCTCCAGCCCTGCCTGTTGCACTTTTTATTACC
CACAAATAGCTTTCCCACCCCCAACCCACATATATCACACCATTTCTCAT
CCCTTGCCTGTACTTATTCCAAATGCATGGACTCTGATTCAATTAGACCC
ATGCATGTGAACCTGCTGAGTCAGGACTGAAAGGTGCAGATTGAAGGCTC
CTGAGCCATGCCCTACGGGAGTGGTGAGGAAAGACTCCATAATTCTGTGA
CTCACCTACATAGCTAGGTCCCTGAAAAGCAAACCTTAGATTCCCTCACT
TAAGATGCTACTGCCTAATATAAAGTAGACAGAAAATGACAAATATCAGT
GGGTGTTGTTCGACTGGTCTTGTGCCTTGTCTAGCTTCTCACCTTGTCTA
GTTCTCCTTTGCATCCGTGTGCAAGACTGTACTATCTGTTGTCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGTGTAGACCAGGCTGCCTCCACCTTCA
ACTCACACACATTTACCTGCCTTTTCTTCTGAGTGCTGGGGTTAAAGGTG
TAAACTGCTCGCCTAGCTAAGTAAGCATTAAGTATCTTTAAGAAAAACAA
TATGGGGGGTGGGGGTGGGGACATCCTCTTGGAGACAGGGGAGAGGAGGA
ATAGGATGAGGAACTGTGGGAGGGCAGACTAGGAGGGGGATAACAACTGA
ACGATAAAAAAATAAAAGTAATAAAATTTTTTTAAAAAAGAAAAACAATA
TGGAGAGAGAATGAAACGGAGTGTTTATCACAACTTGCAAGTTTTCTTTT
TTTAGCCAATGAAAAGATGGTAAGAAAACCTCATGATTGTAATAGACAAA
AAAAAAAGTGTGTATGTGTGTGTGTGCACCTCCAGAAAGTGTCTCCAGAC
AGAAGTTTTATGAGTATGATGACATATCACCTCAGAGGATAGTTCCCTGG
CAGTCAGACTTGTTTGTTGTTGTCTTTGCTCTGGTAAACCCTGATCTGCT
CTGGGTTAAAGTGTTCACCTCTGCGGCTCCACAGTTTCTCATGTTCAGAC
CGACTTGTTTTTTTATTTTTTAGCTTCTTCCCGTTTCCCATTGTCATCTT
CAGTTTAGGGCGCGGTTTTTCCTTCTCGCGCTTGTTCTTTTTTTGTGTTT
CTCTGCCTGTCTCTTCCGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_b09.b1 MSMg01no525_b09.b1 CHROMAT_FILE:
MSMg01no525_b09.b1 PHD_FILE: MSMg01no525_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:34 2005
         (670 letters)



>mm_chr1_155564393_155565462
          Length = 1070

 Score = 1259 bits (651), Expect = 0.0
 Identities = 663/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaacacattgtagctcggcattaaagctctggctttgatttcttcctcaactta 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaacacacagtagctcggcattaaagctctggctttgatttcttcctcaactta 263

                                                                       
Query: 64  tgtttcatggtttcttctacctttcaaatatttatttctatttctatttgtgtatatgcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtttcatggtttcttctacctttcaaatatttatttctatttctatttgtgtatatgcc 323

                                                                       
Query: 124 atgtatgtgcaggtggtcatggagaccagaggagggcattggatcctttggagctggaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtatgtgcaggtggtcatggagaccagaggagggcattggatcctttggagctggaat 383

                                                                       
Query: 184 tgtgggcaactgaaaaccactttatagggtgctgcgaaaagaactgaggtcccgtggaag 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatgggcaactgaaaaccactttatagggtgctgcgaaaagaactgaggtcccgtggaag 443

                                                                       
Query: 244 agcagtcagcacttttaactgctgagccagctagctctccagccctgcctgttgcacttt 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcggtcagcacttttaactgctgagccagctagctctccagccctgcctgttgcacttt 503

                                                                       
Query: 304 ttattacccacaaatagctttcccacccccaacccacatatatcacaccatttctcatcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttattacccacaaatagctttcccacccccaacccacatatatcacaccatttctcatcc 563

                                                                       
Query: 364 cttgcctgtacttattccaaatgcatggactctgattcaattagacccatgcatgtgaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttgcctgtacttattccaaatgcatggactctgattcaattagacccatgcatgtgaac 623

                                                                       
Query: 424 ctgctgagtcaggactgaaaggtgcagattgaaggctcctgagccatgccctacgggagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgctgagtcaggactgaaaggtgcagattgaaggctcctgagccatgccctacgggagt 683

                                                                       
Query: 484 ggtgaggaaagactccataattctgtgactcacctacatagctaggtccctgaaaagcaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggtgaggaaagactccataattctgtgactcacctacatagctaggtccctgaaaagcaa 743

                                                                       
Query: 544 accttagattccctcacttaagatgctactgcctaatataaagtagacagaaaatgacaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 accttagattccctcacttaagatgctactgcctaatataaagtagacagaaaatgacaa 803

                                                                       
Query: 604 atatcagtgggtgttgttcgactggtcttgtgccttgtctagcttctcaccttgtctagt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atatcagtgggtgttgttcgactggtcttgtgccttgtctagcttctcaccttgtctagt 863

                  
Query: 664 tctcctt 670
           |||||||
Sbjct: 864 tctcctt 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no525_b09.g1 MSMg01no525_b09.g1 CHROMAT_FILE:
MSMg01no525_b09.g1 PHD_FILE: MSMg01no525_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:34 2005
         (411 letters)



>mm_chr1_155716597_155717407
          Length = 811

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 70  ggttaaaggtgtaaactgctcgcctagctaagtaagcattaagtatctttaagaaaaaca 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ggttaaaggtgtaaactgctcgcctagctaagtaagcattaagtatctttaagaaaaaca 752

                                                                       
Query: 130 atatggggggtgggggtggggacatcctcttggagacaggggagaggaggaataggatga 189
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 atatggggggtgggggcggggacatcctcttggagacaggggagaggaggaataggatga 692

                                                                       
Query: 190 ggaactgtgggagggcagactaggagggggataacaactgaacgataaaaaaataaaagt 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ggaactgtgggagggcagactaggagggggataacaactgaacgataaaaaaataaaagt 632

                                                                       
Query: 250 aataaaatttttttaaaaaagaaaaacaatatggagagagaatgaaacggagtgtttatc 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aataaaatttttttaaaaaagaaaaacaatatggagagagaatgaaacggagtgtttatc 572

                                                                       
Query: 310 acaacttgcaagttttctttttttagccaatgaaaagatggtaagaaaacctcatgattg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 acaacttgcaagttttctttttttagccaatgaaaagatggtaagaaaacctcatgattg 512

                                                     
Query: 370 taatagacaaaaaaaaaagtgtgtatgtgtgtgtgtgcacct 411
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 taatagacaaaaaaaaaagtgtgtatgtgtgtgtgtgcacct 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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