BAC Information

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BAC

Clone NameMSMg01-525E21
Chromosome1 (Build37)
Map Location 104,317,391 - 104,317,750
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525E21.T7 (MSMg01no525_e21.b1)MSMg01-525E21.TJ (MSMg01no525_e21.g1)
ACCAG595173AG595174
length767773
length of high quality
(start - end)		634 (36 - 669)365 (67 - 431)
definitionCHROMAT_FILE: MSMg01no525_e21.b1 PHD_FILE: MSMg01no525_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:52 2005CHROMAT_FILE: MSMg01no525_e21.g1 PHD_FILE: MSMg01no525_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCTGCCGCTAACGACTCACTATATGTCGAGGATCCGCGGAATTCCAAGC
TCATTTCCAGCTTCAAGGACTTTCTAGGACATTAGTGAAGACCAGGGAGT
AAAAATCCAGGGAGTAAAGTTCAACCGGATTTAAGTATTTGTAAAATCAT
TACTTGGAAGCACCTATAATACAAGAAAGCACACAGATCCATATACCAGA
CTAACACAGGAACAGGTTTGAGTGTATGTTCTATGGGAATGCCAAGGTTT
CAGGAGGCTAGTTTTCCGTGAAACTTTTTGCCTCTTGACTGCTTCAAGGC
TTCTAAACCTCTCACGCAGACTTCACTGGAGTGGATGTAGCACCCACCCC
CCCAAAAAATTCTTCTATCCCCTCCACATCCCCTGCACACCTACCCACCA
ATAGCTGCTTCCTGGCCCTGGCTTTCCCATACACTTGGCATAAAACCTTT
ACAGGCCCTCCTCCCATTGATGACCGACTAAGCCATTCTCTGCTACATAT
GCAGCTAGAGACTCGAGTCCTAGCATATGTTTTCTTTGATTGATGGTTTA
GTTGCAGGGAGCTTTGTGGATATTGGTTAGTTCATATTATTGTTCCTCCT
ATGGGTTTGTAAACCCCTTCAGCTCCTTGGTTACTTTCTCTAGCTTTTTT
ATGATCATTTTTGAAAGTGTATTGCTTTAAAAGCTATAATGTTTTTGAGA
ATGCCTTGACCATGAGATAGAGAAATGGCTGATTAGTGAAGAGTACTTGG
TACTATTTCCGGAGACN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAGTAGAGAGCATATGTAAAAGGGAAATATTAT
GTCCTGACACAGGAATCAGAGAAGACTAAGAGAGATCAATCTTGTTTATT
CATAAAATCAACGTTAAGGGAATTACACAGGGTTTCATGAGAACTCTCCT
ATTCTGCCTCATGTGTAGTACCTGAGTGACCTATAGACTTTTCAAACAAG
CCCCTCCCTCATAATGTTCCATCACCTATCATAACATCATGATGCAATCC
CTCTTCAGCACTGGGATGATAGGTGCTTTGGCTCCATATATATGGACATA
CTAGCATACACCTGAAATATGCATATTTGTGTGTGTATTATGTATGTATT
ATGTATGTATATATGTATGTATGTATGGATGNNNNCNTGNNTGNGTGTTN
GNTTTNTCTTTGNTTTTGTGTCTTCTTGCTTCTGTGGTGTTTGTNTTTGT
CCTTTTCCTGTTTTGGTATTTGTCTCCCTCGCTTTCTTTTCTGTTTCTTT
CCTTTTGTTTTTTTTCGCTGTTTGTTTTCGCCCCCCCCTTTTGTCTTTTT
TTGTTTTTTTTTTCCTTTCGTTTTTTCTGGTGTGTCTCGGGCTTTGTTTT
CCCTCCCTTTTTTCTTTTTCCTCGTTGTTTGTTCGCCTCTGGCTTTTTGT
CTTTTTCTTTTTTTTGGTGTCGCCCCGCTGTTGTTGCTCTTCTTTCCGGG
TGTTGCTTTTCCCGTCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_e21.g1 MSMg01no525_e21.g1 CHROMAT_FILE:
MSMg01no525_e21.g1 PHD_FILE: MSMg01no525_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:52 2005
         (365 letters)



>mm_chr1_104317239_104318002
          Length = 764

 Score =  690 bits (357), Expect = 0.0
 Identities = 360/361 (99%), Gaps = 1/361 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagtagagagcatatgtaaaagggaaatattatgtcctgacacaggaatcagagaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agagtagagagcatatgtaaaagggaaatattatgtcctgacacaggaatcagagaagac 453

                                                                       
Query: 61  taagagagatcaatcttgtttattcataaaatcaacgttaagggaattacacagggtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 taagagagatcaatcttgtttattcataaaatcaacgttaagggaattacacagggtttc 393

                                                                       
Query: 121 atgagaactctcctattctgcctcatgtgtagtacctgagtgacctatagacttttcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 392 atgagaactctcctattctgcctcatgtgtagtacctgagtgacctatagacttttc-aa 334

                                                                       
Query: 181 caagcccctccctcataatgttccatcacctatcataacatcatgatgcaatccctcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caagcccctccctcataatgttccatcacctatcataacatcatgatgcaatccctcttc 274

                                                                       
Query: 241 agcactgggatgataggtgctttggctccatatatatggacatactagcatacacctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agcactgggatgataggtgctttggctccatatatatggacatactagcatacacctgaa 214

                                                                       
Query: 301 atatgcatatttgtgtgtgtattatgtatgtattatgtatgtatatatgtatgtatgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 atatgcatatttgtgtgtgtattatgtatgtattatgtatgtatatatgtatgtatgtat 154

            
Query: 361 g 361
           |
Sbjct: 153 g 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 764
Length adjustment: 9
Effective length of query: 356
Effective length of database: 755
Effective search space:   268780
Effective search space used:   268780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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