BAC Information

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BAC

Clone NameMSMg01-525F19
Chromosome1 (Build37)
Map Location 104,317,382 - 104,317,750
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525F19.T7 (MSMg01no525_f19.b1)MSMg01-525F19.TJ (MSMg01no525_f19.g1)
ACCAG595217AG595218
length751762
length of high quality
(start - end)		605 (64 - 668)373 (67 - 439)
definitionCHROMAT_FILE: MSMg01no525_f19.b1 PHD_FILE: MSMg01no525_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:57 2005CHROMAT_FILE: MSMg01no525_f19.g1 PHD_FILE: MSMg01no525_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCCAAGCTC
ATGCTCAGCTTCAAGGACTTTCTAGGACATTAGTGAAGACCAGGGAGTAA
AAATCCAGGGAGTAAAGTTCAACCGGATTTAAGTATTTGTAAAATCATTA
CTTGGAAGCACCTATAATACAAGAAAGCACACAGATCCATATACCAGACT
AACACAGGAACAGGTTTGAGTGTATGTTCTATGGGAATGCCAAGGTTTCA
GGAGGCTAGTTTTCCGTGAAACTTTTTGCCTCTTGACTGCTTCAAGGCTT
CTAAACCTCTCACGCAGACTTCACTGGAGTGGATGTAGCACCCACCCCCC
CAAAAAATTCTTCTATCCCCTCCACATCCCCTGCACACCTACCCACCAAT
AGCTGCTTCCTGGCCCTGGCTTTCCCATACACTTGGCATAAAACCTTTAC
AGGCCCTCCTCCCATTGATGACCGACTAAGCCATTCTCTGCTACATATGC
AGCTAGAGACTCGAGTCCTAGCATATGTTTTCTTTGATTGATGGTTTAGT
TGCAGGGAGCTTTGTGGATATTGGTTAGTTCATATTATTGTTCCTCCTAT
GGGTTTGTAAACCCCTTCAGCTCCTTGGTTACTTTCTCTAGCTTTTTTAT
GATCATTTTTGAAAGTGTATTGCTTTAAAAGCTATAATGTTTTTGAGAAT
GCCTTGACCATGAGATAGAGAAATGGCTGAATAGTGAAGAGTACTTGGTA
N

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAGTAGAGAGCATATGTAAAAGGGAAATATTAT
GTCCTGACACAGGAATCAGAGAAGACTAAGAGAGATCAATCTTGTTTATT
CATAAAATCAACGTTAAGGGAATTACACAGGGTTTCATGAGAACTCTCCT
ATTCTGCCTCATGTGTAGTACCTGAGTGACCTATAGACTTTTCAAACAAG
CCCCTCCCTCATAATGTTCCATCACCTATCATAACATCATGATGCAATCC
CTCTTCAGCACTGGGATGATAGGTGCTTTGGCTCCATATATATGGACATA
CTAGCATACACCTGAAATATGCATATTTGTGTGTGTATTATGTATGTATT
ATGTATGTATATATGTATGTAATGTATGTATGTTTGCNTGCNTGCNTGTN
TNCTTNATCTATGCTTTTGGTCCTTCTTGCTTCTGTGGTATATTGAAAAT
GTCCTCTACATGTTATGGAAAATGAATACATTGTTCTTATTTGGTGGCAC
TATGGCAGTATTTGAATAAGTTTAAGAGATAGTCTCGATAAAGGAATTTC
AAGTGAAAGCTGGTTTTGAAATTTCTAGCCATATCATGGAGTATGCTTTC
CTTCTATTTTTATTCTTCTAATTCTTGCTTGTGGCTTAAAACATTAATAT
TCCCCCTTTGTATGTTTTACATCCCTGTCTTTGTTTCCTTTTCACTTGAT
AAACTTCCCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_f19.g1 MSMg01no525_f19.g1 CHROMAT_FILE:
MSMg01no525_f19.g1 PHD_FILE: MSMg01no525_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:57 2005
         (373 letters)



>mm_chr1_104317239_104318010
          Length = 772

 Score =  694 bits (359), Expect = 0.0
 Identities = 368/371 (99%), Gaps = 2/371 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagtagagagcatatgtaaaagggaaatattatgtcctgacacaggaatcagagaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agagtagagagcatatgtaaaagggaaatattatgtcctgacacaggaatcagagaagac 453

                                                                       
Query: 61  taagagagatcaatcttgtttattcataaaatcaacgttaagggaattacacagggtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 taagagagatcaatcttgtttattcataaaatcaacgttaagggaattacacagggtttc 393

                                                                       
Query: 121 atgagaactctcctattctgcctcatgtgtagtacctgagtgacctatagacttttcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 392 atgagaactctcctattctgcctcatgtgtagtacctgagtgacctatagacttttc-aa 334

                                                                       
Query: 181 caagcccctccctcataatgttccatcacctatcataacatcatgatgcaatccctcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caagcccctccctcataatgttccatcacctatcataacatcatgatgcaatccctcttc 274

                                                                       
Query: 241 agcactgggatgataggtgctttggctccatatatatggacatactagcatacacctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agcactgggatgataggtgctttggctccatatatatggacatactagcatacacctgaa 214

                                                                       
Query: 301 atatgcatatttgtgtgtgtattatgtatgtattatgtatgtatatatgtatgtaatgta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 213 atatgcatatttgtgtgtgtattatgtatgtattatgtatgtatatatgtatgt-atgta 155

                      
Query: 361 tgtatgtttgc 371
           ||| |||||||
Sbjct: 154 tgtttgtttgc 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 772
Length adjustment: 9
Effective length of query: 364
Effective length of database: 763
Effective search space:   277732
Effective search space used:   277732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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