BAC Information

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BAC

Clone NameMSMg01-525I09
Chromosome1 (Build37)
Map Location 173,012,052 - 173,012,539
singlet/doubletsinglet
Overlap genenone
Upstream geneDdr2, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3
Downstream gene1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525I09.T7 (MSMg01no525_i09.b1)MSMg01-525I09.TJ (MSMg01no525_i09.g1)
ACCAG595339AG595340
length750840
length of high quality
(start - end)
529 (66 - 594)83 (69 - 151)
definitionCHROMAT_FILE: MSMg01no525_i09.b1 PHD_FILE: MSMg01no525_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:10 2005CHROMAT_FILE: MSMg01no525_i09.g1 PHD_FILE: MSMg01no525_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTTTTGTCGTAATACACTCACTATTCTCAATGATCCGCGGAATTCTCGC
CTTCCTCACAAGAGGCCCGGGTTCGATTCCCGGCCCATGCAGAGTCCAGT
CCCTTTTGGTCTTCACGCCCACATTGCCCTTGGACAGCCTGCGCTGTACA
CCACACCTCCTCCACATACACAGACACACTCCACTGGGCCACTGGGCCAC
TGGGCCACTGGGCCACTGCACACACACTCTGGCCTGCCTGTAAGCCTTGC
CTCTCCTCATTCTGACAACTACCTAGAGCCTCCTTCAAATCACCTGACAC
ACTCAGCCTACCCACTCGCCTCCACCAACAAGAAACTACACACTCAGCCT
ACCCACTCGCCTCCACCAACAAGAAACTACACACTCAGCCTACCCACTCG
CCTCCACCACCCTCTTATGCTTTCCCTTCTCCATCTTCTTCTCCAAGGAG
TTATATATTTGTTTTCTGGAGGTACACTCTCCCTCTCTTTAGATACACCA
GAAGACACCACATACACCAGATTCATCAGATTCCATTACACGTGGTTGGG
AGCCACCATGTGCTTGCTGGCAATTAAACTCATGACCTCTGTAAGAGCAA
TTGGTGCTCTTACCCACTGAGACATCTAAACCTGACACCACCTTCACCTA
CAGGTTCCCTCCCTACAGTGCTGGAGATAAGCCCTCCTCCTCCTCTTCCT
CCTTTGGGATGTGGACTTGTGTAACCCCAAAACTCTCTTCTGTGTCTTTA

TTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXGGGGGAAGGGGGGACGGCGGGGGGCGGTAGAG
GTCTGTTTTGGGGGGTTGGATTGTGAGTAGCAGTCCTTTGGAGGTGGTAT
ATAGTGGAGAGTTGTGCCCCTTTCCCTTTTTCCTTTTTTTCCCTTTTCCC
TTCTTTTCTCTTGCCGTTTCCCCCTTTTTTTTCCCCCCCCCTTTTCTCTT
TTTTTTTCCTTTCCCCCCTTTTTCCCCCTTCCCTTTCCCCTCCCCTTCCC
GTTTACCCTTCCTTTTTCTCCTGCTTTTCGTCCTTTTCTTTTTCCTTTCC
CTTTCTTTTTCCCCCTTCCTTCCCTTCCTCCTCTTTTTCCTCCTCCCCTT
CCTTACTTTTCCCCCTTTCCTTTTTCCTTCTTCCTTTCTTTCCCCTTTTC
CTCCCCCCTTTTTCCCCCCCTTTCTTCTCCCTCCTTCTTTTTCCCCTTTT
CCCCCTCCTCCTTATCCTATTTTTTCTTCTTCCTTTTCTCCCTCCCCCTT
TCTTTTTCTTTTTTCCTCCCGCTTTTCCCTCCTTTTTCCACCTTTTTTTC
TCTTCCCCCCCCCCCCCTTTTTTTCTTCCTTCTCCTTATATCTTTCCCCT
TCCTTTTTATCCCTCTTTCTCCCTCCCCCCTCTGTTTTTCCCCTCCCCTT
TTATTGCCCTTCCCCTCGCGCTCCTCTTCGCTTCTCCCCCCCTATCTATC
TCCTTCTTTCCTCATTTTTTCGCGTTCTCCCCCCCCGCCGTTCTTAGCTT
CTCCTTTCCCCGCTGGTTTCTTTCTCCCCCCCTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_i09.b1 MSMg01no525_i09.b1 CHROMAT_FILE:
MSMg01no525_i09.b1 PHD_FILE: MSMg01no525_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:10 2005
         (529 letters)



>mm_chr1_173011852_173012780
          Length = 929

 Score =  830 bits (429), Expect = 0.0
 Identities = 484/529 (91%), Gaps = 41/529 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccgggttcgattcccggcccatgcagagtccagtcccttttggtcttcacgcccacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccgggttcgattcccggcccatgcagagtccagtcccttttggtcttcacgcccacatt 260

                                                                       
Query: 61  gcccttggacagcctgcgctgtacaccacacctcctccacatacacagacacactccact 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gcccttggacagcctgcgctgtacaccacacctcctccacatacaaagacacactccact 320

                                                                       
Query: 121 gggccactgggccactgggccactgggccactgcacacacactctggcctgcctgtaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggccactgggccactgggccactgggccactgcacacacactctggcctgcctgtaagc 380

                                                                       
Query: 181 cttgcctctcctcattctgacaactacctagagcctccttcaaatcacctgacacactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgcctctcctcattctgacaactacctagagcctccttcaaatcacctgacacactca 440

                                                                       
Query: 241 gcctacccactcgcctccaccaacaagaaactacacactcagcctacccactcgcctcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctacccactcgcctccaccaacaagaaactacacactcagcctacccactcgcctcca 500

                                                                       
Query: 301 ccaacaagaaactacacactcagcctacccactcgcctccaccaccctcttatgctttcc 360
           |||                                         ||||||||||||||||
Sbjct: 501 cca-----------------------------------------ccctcttatgctttcc 519

                                                                       
Query: 361 cttctccatcttcttctccaaggagttatatatttgttttctggaggtacactctccctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cttctccatcttcttctccaaggagttatatatttgttttctggaggtacactctccctc 579

                                                                       
Query: 421 tctttagatacaccagaagacaccacatacaccagattcatcagattccattacacgtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 580 tctttagatacaccagaagacaccacatacaccagattcatcagattccattacatgtgg 639

                                                            
Query: 481 ttgggagccaccatgtgcttgctggcaattaaactcatgacctctgtaa 529
           |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 640 ttgggagcgaccatgtgcttgctggcaattaaactcaggacctctgtaa 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)