Query= MSMg01no525_m06.b1 MSMg01no525_m06.b1 CHROMAT_FILE:
MSMg01no525_m06.b1 PHD_FILE: MSMg01no525_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:29 2005
(544 letters)
>mm_chr1_115164092_115165035
Length = 944
Score = 984 bits (509), Expect = 0.0
Identities = 529/537 (98%), Gaps = 5/537 (0%)
Strand = Plus / Minus
Query: 7 attcactattcttggatattttttcatatttttttaacagaacatgaatttataaggcaa 66
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 554 attcactattcttggatattttttcatatttttttaacagaacctgaatttataaggcaa 495
Query: 67 ataacaggaaaccttctgagaccatgaactcaggagcaattttctagttctttttagcta 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ataacaggaaaccttctgagaccatgaactcaggagcaattttctagttctttttagcta 435
Query: 127 tgaaaggaaaagcagagaaaataatctgtgataaaaatttaaaggtaatattatgcatat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgaaaggaaaagcagagaaaataatctgtgataaaaatttaaaggtaatattatgcatat 375
Query: 187 aaaattcaaagagaagtccattagggtcagggaatggtcgttttcatcattttgatggac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaattcaaagagaagtccattagggtcagggaatggtcgttttcatcattttgatggac 315
Query: 247 ataaaatggaattctcccaaaggcagtgcagctgcatcacagaagctgcatctcaccaac 306
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 314 ataaaatggaattctcccaaaggcagtgcagctgcgtcacagaagctgcatctcaccaac 255
Query: 307 ctacagacagtatccatctattcttcacttctcctccctttctattttttccttcctttc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctacagacagtatccatctattcttcacttctcctccctttctattttttccttcctttc 195
Query: 367 tgccttcttcccttcctttcttcaatttgatctttccaaaaagatatcagcctttatgaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tgccttcttcccttcctttcttcaatttgatctttccaaaaagatatcagcctttatgaa 135
Query: 427 atggcaaatcccctctatgtgccataaccacagagaagcacctttcttttttctcttctt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 atggcaaatcccctctatgtgccataaccacagagaagcacctttcttttttctcttctt 75
Query: 487 ttcttttcttttcttttcttttcctttcttttcttttcttttctttt-cttttcttt 542
||||||||||||||||||||||| |||||||||| |||||||||| |||| ||||
Sbjct: 74 ttcttttcttttcttttcttttcttttcttttct---cttttctttttcttt-cttt 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_m06.g1 MSMg01no525_m06.g1 CHROMAT_FILE:
MSMg01no525_m06.g1 PHD_FILE: MSMg01no525_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:29 2005
(356 letters)
>mm_chr1_115002530_115003285
Length = 756
Score = 654 bits (338), Expect = 0.0
Identities = 354/366 (96%), Gaps = 11/366 (3%)
Strand = Plus / Plus
Query: 1 ctttcttttttgccaggaacattgaatctggctgggcaggagagagggaggtttggcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcttttttgccaggaacattgaatctggctgggcaggagagagggaggtttggcact 260
Query: 61 tgctatcgctttgtgaatgaagaaaacaaagtcatgtttgcagagaagcaagcaaacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctatcgctttgtgaatgaagaaaacaaagtcatgtttgcagagaagcaagcaaacaaa 320
Query: 121 caaacaaacaaaaaacacaaaaacttttccacaggcaagatggacagaaaaacccacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaaacaaaaaacacaaaaacttttccacaggcaagatggacagaaaaacccacact 380
Query: 181 catatgttcacacacacacattttctggggaggcccacccatctaatcaacttgcataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catatgttcacacacacacattttctggggaggcccacccatctaatcaacttgcataat 440
Query: 241 tacacacatacacacacatctatacttacaaatgtgtatatatatat-----------ta 289
||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 tacacacatacacacacatctatacttacaaatgtgtatatatatataatatatatatta 500
Query: 290 tatgtatatgtatatatatgcacacatacatatatgtgtgtgtgtgtgtgtgtgtgtgtg 349
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tatgtatatgtatatatatgcacacatacatatatgtgtgtgtgtgcgtgtgtgtgtgtg 560
Query: 350 tgtgtg 355
||||||
Sbjct: 561 tgtgtg 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
