BAC Information

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BAC

Clone NameMSMg01-525N17
Chromosome1 (Build37)
Map Location 132,802,010 - 132,802,419
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24
Downstream geneIl20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525N17.T7 (MSMg01no525_n17.b1)MSMg01-525N17.TJ (MSMg01no525_n17.g1)
ACCAG595592AG595593
length768770
length of high quality
(start - end)		678 (34 - 711)490 (64 - 553)
definitionCHROMAT_FILE: MSMg01no525_n17.b1 PHD_FILE: MSMg01no525_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:36 2005CHROMAT_FILE: MSMg01no525_n17.g1 PHD_FILE: MSMg01no525_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTATTAC
CTCTGCAGGGTCCACCCATTTTTACCAGGTTCTTTGTAGAGTTATGTGGG
TCTTACCTGGTACAAATGAGAACTTCAGCAATAAATAATCAAATCAAATT
AGGGCTTGAGGGAGGCCCCGGGAAGGTGGGCTACTTGGAGGACATGTAGT
GATGGAGGTTCCACAGCGGCTCCCTAGATCTGGGATACAGGAATCAGGAA
CTTCTCCTTAGTCCTGGATCTGCTTTCTGCTGTTTCAGTTGAGAACAAGT
ATGGTCAGAAGGTGTTAAGTTGGAAATTCTAAAGGTAAATGATCTGTAAC
TTTTAAATGACTTTTATTATAGTGTGTCGTTATTGTTGCTAGTCTTTTAT
GGTGTCCAGTTCATACATTAAACTCTAGCATAGGTATGTATTGTATGTAT
GCATGCCTGAATGTATGTATGTATGTATAGAAGAAAATGTCTTTTGTACC
CGAGGGTTCTGTTAATGCAGATTCAAGCAGTTGTGAATTAAAAAAAAATT
GAAAAAAAATCACATTTGTATTGAACTGACATAGACTTTTTTCATCTTCA
TTCCCTTCATTATAGTCTCCCAGTTATGCACATGGCTTTTATGTTACATT
AAATACATGACTATATAAATGAATGTATAGGTCGTGCATAAATACTATGC
CATTTTATATAAAGGAGTTGAACATCCATGGAGTTGAATATTCTTAGGGA
GAGAAAGCAATTTGGAAT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAGACCAACAAACACCTTAGTGAGACCCGGTCTCAAA
AACTTAAAAGGCTGGGGATGGAGCTCAGGGGCAATCTACTTGTTGTGTAG
CATGTGTAAGGCCCTGGGTTCAACCACACACACACACACACACACACACA
CACACACACACAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGA
GAGAGAGCAATCAAACCAAGCCAAAGAAGAAGAAAAAATTTAACTTAGCA
TCACTTTCTCAAAGGCATGATTGTTCACTAGAACTTTCCCCAAAGATTAA
AAAAAAACCACACTACACCTGCTCTGCCCAGCTGAGTACCCACTAGCTCC
ATGGAGCTACAAAGACCTAAAATGTAGCTAGTTCACCTCAGTGAGGGACC
AAACTTTTAAGTTTGTTTCATTTTAACTAATCAAAATTAAAGTTGCTAAA
AGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGGG
TGTGTACACGTGCGGCTACGCGTGTATATTGTGAGAGAGCGCGCGCGCGC
GCGCTATCTCTTGTTTTTTTTTTTNNNNNTTTTNNTTCTTTCTTTCCTTN
CCCATTATATTTTTCTTTTTTATTTCCTATTTCTTTATTATCCTTTTTAA
CTTTTATTTTTCCACCCTTTTTTCTTCCCCTCCGTATTTTTTTTTCTTTT
ACCCTCTTCGTCTCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_n17.b1 MSMg01no525_n17.b1 CHROMAT_FILE:
MSMg01no525_n17.b1 PHD_FILE: MSMg01no525_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:36 2005
         (678 letters)



>mm_chr1_132802010_132803086
          Length = 1077

 Score =  748 bits (387), Expect = 0.0
 Identities = 405/411 (98%), Gaps = 1/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttattacctctgcagggtccacccatttttaccaggttctttgtagagttatgt 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaattctcattacctctgcagggtccacccatttttaccaggttctttgtagagttatgt 351

                                                                       
Query: 65  gggtcttacctggtacaaatgagaacttcagcaataaataatcaaatcaaattagggctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gggtcttacctggtacaaatgagaacttcagcaataaataatcaaatcaaattagggctt 291

                                                                       
Query: 125 gagggaggccccgggaaggtgggctacttggaggacatgtagtgatggaggttccacagc 184
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct: 290 gagggaggccccgggaaggtgggctac-tggaggacatgtagtgatgggggttcctcagc 232

                                                                       
Query: 185 ggctccctagatctgggatacaggaatcaggaacttctccttagtcctggatctgctttc 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 231 ggctccctagatctgggatacaggaatcaggaacttctccttagtcctgggtctgctttc 172

                                                                       
Query: 245 tgctgtttcagttgagaacaagtatggtcagaaggtgttaagttggaaattctaaaggta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tgctgtttcagttgagaacaagtatggtcagaaggtgttaagttggaaattctaaaggta 112

                                                                       
Query: 305 aatgatctgtaacttttaaatgacttttattatagtgtgtcgttattgttgctagtcttt 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 111 aatgatctgtaacttttaaatgatttttattatagtgtgtcgttattgttgctagtcttt 52

                                                              
Query: 365 tatggtgtccagttcatacattaaactctagcataggtatgtattgtatgt 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  tatggtgtccagttcatacattaaactctagcataggtatgtattgtatgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space:   712756
Effective search space used:   712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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