XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TCTCGTGCTGTCTTTGATTTTCAATAAACTGGTTGTAATGTAGTTCCTAG
ATGCTTTGAAAAGTTATAAATTAAATTATGGTTAGATGTATACTTCTGCT
TTTTTTTTCCAGAAAAAAAAATGTTTTTTGGAAGCCCATGATCTGTTTAT
ATGTGATAATTTTGAAGTTAACCAAAAAAAAAAAAACAAAAAAAAACAAC
AAAAAAAAAACAATAACAATAACAAATCTATTGAAAATCAAATAGGCTAT
CACAACACTACTTTGCATAGAAAAGTAATGCTATAGTCTCCATGAGTACT
GAGTTATTCTGATTATTTCTCTTTCAACATGACATATTTAATCACTGCTA
TACTTAGGGATAATCAAATCATATATTTCTTATAATATGTCAATCAGAAC
TCACCTTTTACATGGATGGAAGGATGGACCATCCAGAGACTGCCCCACTC
AGGGATCCATCCCATAATCAGCCACCAAACACAGACATTATTGCATATGC
CAGCAAGATTTTGCTGACAGGACCCTAATATAGCTCTCTCTTGTGAGGCT
ATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAATCATCTATTGA
ATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGC
TGAAGGGGTCTGCAATCCTATAAGAGGAACAATAATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATTTTCTTTTTTATTAATCCCATTTATTATTGGA
TATTTTATTTGTTTACATTTCAAATGTTATTCCCTTTACCAGTTTCCCCT
CTGGAAATCATCTATCCCATCTCTCCTTCCCCTGCTTCTATGAGGGTGCT
CCGCCACCCACCCACCCACTCACCCTCTCCTTCCTCCCTGACCTGGCATT
CCCCTACACTGGGGCATTGAGCCTTCACAGGACAAAGGTCTCTTCTCCTC
TTGATGCCATACAAGGCCATCCTCTGCTACATATGCAGCTGGAAGCAAGA
GTCCCTCTATTTGTACCCTTTGGTTGGTGGTTTATTCCCTGGGAGCTCTG
GGGGGGTCTGGTTAGTTGATATTGTTGTTCTTCCTCTTGGATCTGCTGGG
TTTTGTAGAATTTGAATGCGAGGATTCACTGAGATAGACAAGCCATTATA
TGAGGCAATCAGGGGTCAAGAAGACAAAATAGAATGGACCCCTGAGATGG
ACATGGCTTTTACAACTCTAATAGGAGCCTTTGTGGAGGTGTTGGCATTG
GCCTTCCTGAACGTTCACAAACCTTTCCACCTGTATATGATGGAGAGAAA
GAAGATAGAAAATGGGGTGCTTACTAAAACTTTGTGACCCATGGAAAGAT
CTGTGGTTTATTTATCAAGAAGCTGGACTGAGTGGCCCCAAGAAAN

Query= MSMg01no526_b01.b1 MSMg01no526_b01.b1 CHROMAT_FILE:
MSMg01no526_b01.b1 PHD_FILE: MSMg01no526_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:52 2005
         (667 letters)



>mm_chr1_27657968_27659034
          Length = 1067

 Score = 1214 bits (628), Expect = 0.0
 Identities = 653/666 (98%), Gaps = 10/666 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattctcgtgctgtctttgattttcaataaactggttgtaatgtagttcctagat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaattcattctcgtgctgtctttgattttcaataaactggttgtaatgtagttcctagat 797

                                                                       
Query: 65  gctttgaaaagttataaattaaattatggttagatgtatacttctgctttt--tttttcc 122
           ||||||||||||||||||||||||||||||||||||| |||||||| ||||  |||||||
Sbjct: 796 gctttgaaaagttataaattaaattatggttagatgtgtacttctggtttttatttttcc 737

                                                                       
Query: 123 agaaaaaaaaatgttttttggaagcccatgatctgtttatatgtgataattttgaagtta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agaaaaaaaaatgttttttggaagcccatgatctgtttatatgtgataattttgaagtta 677

                                                                       
Query: 183 acc-aaaaaaaaaaaaacaaaaaaaaacaacaaaaaaaaaacaataacaataacaaatct 241
           ||| |||||||||||||||||| |||||       |||||||||||||||||||||||||
Sbjct: 676 accaaaaaaaaaaaaaacaaaacaaaac-------aaaaaacaataacaataacaaatct 624

                                                                       
Query: 242 attgaaaatcaaataggctatcacaacactactttgcatagaaaagtaatgctatagtct 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 attgaaaatcaaataggctatcacaacactactttgcatagaaaagtaatgctatagtct 564

                                                                       
Query: 302 ccatgagtactgagttattctgattatttctctttcaacatgacatatttaatcactgct 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccatgagtactgagttattctgattatttctctttcaacatgacatatttaatcactgct 504

                                                                       
Query: 362 atacttagggataatcaaatcatatatttcttataatatgtcaatcagaactcacctttt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atacttagggataatcaaatcatatatttcttataatatgtcaatcagaactcacctttt 444

                                                                       
Query: 422 acatggatggaaggatggaccatccagagactgccccactcagggatccatcccataatc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acatggatggaaggatggaccatccagagactgccccactcagggatccatcccataatc 384

                                                                       
Query: 482 agccaccaaacacagacattattgcatatgccagcaagattttgctgacaggaccctaat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agccaccaaacacagacattattgcatatgccagcaagattttgctgacaggaccctaat 324

                                                                       
Query: 542 atagctctctcttgtgaggctatgccagtgcctggcaaatacagaagtggatgctcacaa 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atagctctctcttgtgaggctatgccagtgcctggcaaatacagaagtggatgctcacaa 264

                                                                       
Query: 602 tcatctattgaatggaacacagggcccccaatggaggagctagagaaagtacccaaggag 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcatctattgaatggaacacagggcccccaatggaggagctagagaaagtacccaaggag 204

                 
Query: 662 ctgaag 667
           ||||||
Sbjct: 203 ctgaag 198


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)