BAC Information

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BAC

Clone NameMSMg01-526L11
Chromosome1 (Build37)
Map Location 133,309,176 - 133,440,907
singlet/doubletdoublet
Overlap geneSrgap2, LOC100042821, 2700049P18Rik
Upstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, LOC100042826
Downstream geneAvpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526L11.T7 (MSMg01no526_l11.b1)MSMg01-526L11.TJ (MSMg01no526_l11.g1)
ACCAG596242AG596243
length733730
length of high quality
(start - end)		602 (39 - 640)606 (69 - 674)
definitionCHROMAT_FILE: MSMg01no526_l11.b1 PHD_FILE: MSMg01no526_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:43 2005CHROMAT_FILE: MSMg01no526_l11.g1 PHD_FILE: MSMg01no526_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,440,311 - 133,440,907)(133,309,176 - 133,309,776)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TCTGTAGCTCAGTATTCTAAGGTATTTGTGAATGTGGTTACAGAGCCATT
TTGATAAGACAAGGCAATGTTCCAATGGCTGAGAATGTTTCTCCTTAAAA
AAAACATTAAAAAAAAATTTCACTGAACACCCTGGGAATCCACCCACGCA
CAGGCAGTCTCCTGCAATACTCAGGCTGCTTTTCAGGTGTCATAGCCATA
ATAACAGGTGCTTCCTCCGGGGAGAAAAAAAATATGGCAATGAGAGAGAA
GCAGAAAGCAAACTGTTGGGATATTCCGGGTACAGCTTCCCCTACGTGAA
TCACTCACATACGCTTGCTTCTGCTGGGGGCTCCTTGGCAGAGGAAATGA
TTTGTGTGAACGGAGGTGGAGAGACACATTCTGGTGGCAAACTTCAGCTG
AGCCCATCCGTGGCAACTCCAATGAACCGTTAGCTGTTTGTCAAGGCACT
CTGCCATAAATATCAAAATGCCAAGTTGAACGTAGATTTGATACCTGGTT
TTGCTCTTTAATACATGCATAATCTTGTATGAAAGTCAAGCAGTACTCAT
TTACAGCAAGACAGATTCTAAAATTATACATAAATACACTTCAAATGTAA
GCTTATAAGAAAATGGAGACTAGGGACATTTGCAAAAGGTGGTCATTGGA
TTCTGTTTTCGAGAACACACATATCTTAAACAT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTCTGGCATGGAACTTAGAAATCCACCTGCC
TCTGCCTCCCAAGTGTTGGGTTTAAAGGCATGCACCACCACTGCCTGGCC
TTTTCTGGCTCCTGAGTCTTTTTTTTTAATTATTACTATTTTATTTTATG
TATATGAGTATATTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCGG
ACCCCATTACAGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAAC
TCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCT
CCAGTTCAATTACCACCATTTTCATGATTAGAAAACTGAAACTCTCATAC
AAGTAAAGAGCAAGAGGACGTCAGAGGACCACAGTTCTGTATTGTCTGAC
TAGGATACATCAGACTGTATCTCCATAGTCTACATTTTAGAGTTTGGGTC
ACCTGGCTTATCATTAGAGTTTGAGACAAGGATAAAGTACTTATCTACAG
GAGGGGCTGGAGAGATAGCTCAGTGATGAAAAGACTTACTGCTCTTGTAG
AGGACCTGGGTTCAGTTCCTGCACCACATCAGACAGTTCACAACTACTTG
TAATTCCAGTTCTAGGGGATCGACCCGTCTTCTCACATCCATGGGCACTT
GTACTCATGTACACAAACCCATATACATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_l11.b1 MSMg01no526_l11.b1 CHROMAT_FILE:
MSMg01no526_l11.b1 PHD_FILE: MSMg01no526_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:43 2005
         (602 letters)



>mm_chr1_133440107_133441107
          Length = 1001

 Score = 1141 bits (590), Expect = 0.0
 Identities = 596/598 (99%), Gaps = 1/598 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatctgtagctcagtattctaaggtatttgtgaatgtggttacagagccatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaattccatctgtagctcagtattctaaggtatttgtgaatgtggttacagagccatttt 742

                                                                       
Query: 65  gataagacaaggcaatgttccaatggctgagaatgtttctccttaaaaaaaacattaaaa 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 gataagacaaggcaatgttccaatggctgagaatgtttctccttaaaaaaaacatt-aaa 683

                                                                       
Query: 125 aaaaatttcactgaacaccctgggaatccacccacgcacaggcagtctcctgcaatactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaaaatttcactgaacaccctgggaatccacccacgcacaggcagtctcctgcaatactc 623

                                                                       
Query: 185 aggctgcttttcaggtgtcatagccataataacaggtgcttcctccggggagaaaaaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aggctgcttttcaggtgtcatagccataataacaggtgcttcctccggggagaaaaaaaa 563

                                                                       
Query: 245 tatggcaatgagagagaagcagaaagcaaactgttgggatattccgggtacagcttcccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatggcaatgagagagaagcagaaagcaaactgttgggatattccgggtacagcttcccc 503

                                                                       
Query: 305 tacgtgaatcactcacatacgcttgcttctgctgggggctccttggcagaggaaatgatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tacgtgaatcactcacatacgcttgcttctgctgggggctccttggcagaggaaatgatt 443

                                                                       
Query: 365 tgtgtgaacggaggtggagagacacattctggtggcaaacttcagctgagcccatccgtg 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtgtgaatggaggtggagagacacattctggtggcaaacttcagctgagcccatccgtg 383

                                                                       
Query: 425 gcaactccaatgaaccgttagctgtttgtcaaggcactctgccataaatatcaaaatgcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcaactccaatgaaccgttagctgtttgtcaaggcactctgccataaatatcaaaatgcc 323

                                                                       
Query: 485 aagttgaacgtagatttgatacctggttttgctctttaatacatgcataatcttgtatga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aagttgaacgtagatttgatacctggttttgctctttaatacatgcataatcttgtatga 263

                                                                     
Query: 545 aagtcaagcagtactcatttacagcaagacagattctaaaattatacataaatacact 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagtcaagcagtactcatttacagcaagacagattctaaaattatacataaatacact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1001
Length adjustment: 10
Effective length of query: 592
Effective length of database: 991
Effective search space:   586672
Effective search space used:   586672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_l11.g1 MSMg01no526_l11.g1 CHROMAT_FILE:
MSMg01no526_l11.g1 PHD_FILE: MSMg01no526_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:44 2005
         (606 letters)



>mm_chr1_133308976_133309981
          Length = 1006

 Score = 1093 bits (565), Expect = 0.0
 Identities = 592/601 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctggcatggaacttagaaatccacctgcctctgcctcccaagtgttgggtttaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 actctggcatggaacttagaaatccacctgcctctgcctcccaagtgctgggtttaaagg 260

                                                                       
Query: 61  catgcaccaccactgcctggccttttctggctcctgagtctttttttttaattattacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgcaccaccactgcctggccttttctggctcctgagtctttttttttaattattacta 320

                                                                       
Query: 121 ttttattttatgtatatgagtatattgtagctgtcttcagacacaccagaagagggcatc 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttattttatgtatatgagtacattgtagctgtcttcagacacaccagaagagggcatc 380

                                                                       
Query: 181 ggaccccattacagatggttgtgagccatcatgtggttgctgggatttgaactcaggacc 240
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatcccattacagatggttgtgagccatcatgtggttgctgggatttgaactcaggacc 440

                                                                       
Query: 241 tctggaagagcagtcagtgctcttaaccactgagccatctctccagttcaattaccacca 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tctggaagagcagtcagtgctcttaaccactgagccatctcaccagttcaattaccacca 500

                                                                       
Query: 301 ttttcatgattagaaaactgaaactctcatacaagtaaagagcaagaggacgtcagagga 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 501 ttttcatgattagaaaactgaaactctcatacaagtaaagagcaagaggaagtcagggga 560

                                                                       
Query: 361 ccacagttctgtattgtctgactaggatacatcagactgtatctccatagtctacatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacagttctgtattgtctgactaggatacatcagactgtatctccatagtctacatttt 620

                                                                       
Query: 421 agagtttgggtcacctggcttatcattagagtttgagacaaggataaagtacttatctac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagtttgggtcacctggcttatcattagagtttgagacaaggataaagtacttatctac 680

                                                                       
Query: 481 aggaggggctggagagatagctcagtgatgaaaagacttactgctcttgtagaggacctg 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 aggaggggctggagagatagctcagtgatgaaaagacttgctgctcttgtagaggacctg 740

                                                                       
Query: 541 ggttcagttcctgcaccacatcagacagttcacaactacttgtaattccagttctagggg 600
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggttcagttcctgcagcacatcagacagttcacaactacttgtaattccagttctagggg 800

            
Query: 601 a 601
           |
Sbjct: 801 a 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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