Query= MSMg01no527_b03.b1 MSMg01no527_b03.b1 CHROMAT_FILE:
MSMg01no527_b03.b1 PHD_FILE: MSMg01no527_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:11 2005
(692 letters)
>mm_chr1_59887842_59888933
Length = 1092
Score = 1236 bits (639), Expect = 0.0
Identities = 672/687 (97%), Gaps = 7/687 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtagttgttcagtccacaggatctggatgtctcagcaaagtctacctgctaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcagtagttgttcagtccacaggatctggatgtctcagcaaagtctacctgctaga 271
Query: 65 gtcccagagaattcctagagagctgttagtcttcagtctacattggaataccaaagaagt 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 272 gtcccagagaattcctagagagctgctagtcttcagtctacattggaataccaaagaagt 331
Query: 125 aaattctaatcccagcaaagtaatttctcagtaacaggatagacaaacttgccagtggca 184
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 332 aaattctaatcccagcaaagtaatttctcagtaacaggatagatgaacttgccagtggca 391
Query: 185 atgagggcaagcagaccaaaagctttaaaaaactttcttctatgtccttttaagtgggct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgagggcaagcagaccaaaagctttaaaaaactttcttctatgtccttttaagtgggct 451
Query: 245 agcaccagaagttatagctcagatttagggtggaccttcccacctcaaaaaattcaatca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agcaccagaagttatagctcagatttagggtggaccttcccacctcaaaaaattcaatca 511
Query: 305 agaaaattcctcccagctgtgcacagctgcttgagttctagttaattccagatgtaggct 364
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agaaaatccctcccagctgtgcacagctgcttgagttctagttaattccagatgtaggct 571
Query: 365 agatgacaacaaaaattagctgtcaccttagtataaaatgcctgtgatttgaaatgatta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agatgacaacaaaaattagctgtcaccttagtataaaatgcctgtgatttgaaatgatta 631
Query: 425 gaaacaaagttactcattgcagcattgttacagcaaaacagaagtaaccaaatgtacatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gaaacaaagttactcattgcagcattgttacagcaaaacagaagtaaccaaatgtacatc 691
Query: 485 agtagagagcaggttatgttactttgccacaatagtataaaaaaattgtatgaagtttta 544
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agtagagagcaggttacgttactttgccacaatagtataaaaaaattgtatgaagtttta 751
Query: 545 gaatttaaagtatattcagattaaatacagataagcttcaaggaaatattaagtacttca 604
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gaattta-------ttcagattaaatacagataagcttcaaggaaatattaagtacttca 804
Query: 605 gaagaggatatggccatgcattcctatttgtttctttattctacacacataaggaaaatt 664
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 805 gaagaggatatggccatgcattcctatttgtttctttattctacatacataaggaaaatt 864
Query: 665 taaaaaatacaaatacatatgcacatg 691
| ||||||||||||| |||||||||||
Sbjct: 865 tcaaaaatacaaatatatatgcacatg 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_b03.g1 MSMg01no527_b03.g1 CHROMAT_FILE:
MSMg01no527_b03.g1 PHD_FILE: MSMg01no527_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:11 2005
(661 letters)
>mm_chr1_60059013_60060074
Length = 1062
Score = 944 bits (488), Expect = 0.0
Identities = 497/502 (99%), Gaps = 5/502 (0%)
Strand = Plus / Minus
Query: 164 cttaatggaagaatttagtccacttacactt----attattgctaggcagggtcttactg 219
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1062 cttaatggaagaatttagtccacttacacttattgattattgctaggcagggtcttactg 1003
Query: 220 cggctcatccctcccacgttttgagacagggtctctctgtatatctgactggctggaatt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 cggctcatccctcccacgttttgagacagggtctctctgtatatctgactggctggaatt 943
Query: 280 tgctgtgtagaccaggctagcctcaaactcatctatcagctgcctcttccccatgagtgc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 tgctgtgtagaccaggctagcctcaaactcatctatcagctgcctcttccccatgagtgc 883
Query: 340 taggattaaaggcatgggccagctccacctcccttgctaatgatgctcttc-actttaca 398
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 882 taggattaaaggcatgggccagctccacctcccttgctaatgatgctcttcaactttaca 823
Query: 399 gttctctgcttacagttttcctcggtgcctggatggtttttcttcagtgtgctttcagtc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gttctctgcttacagttttcctcggtgcctggatggtttttcttcagtgtgctttcagtc 763
Query: 459 ctttttatttttggtttgtcaactacaggtgtttgctttgtggattaccttaagactcac 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ctttttatttttggtttgtcaactacaggtgtttgctttgtggattaccttaagactcac 703
Query: 519 caagaaaataatctgcctatcagatgctttttttgtaatcataacaatttaacactggtc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 caagaaaataatctgcctatcagatgctttttttgtaatcataacaatttaacactggtc 643
Query: 579 acaaagaatgaaaataaaatgtgaaattaccaagttctgacaaacctccaggagctggag 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 acaaagaatgaaaataaaatgtgaaattaccaagttctgacaaacctccaggagctggag 583
Query: 639 agctgctcagcagctaaagagc 660
||||||||||||||||||||||
Sbjct: 582 agctgctcagcagctaaagagc 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space: 684852
Effective search space used: 684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
