TTTTTTCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTTGTCTCTTTTTGAAAAGCTACACACCTTTAGCATTC
TGGTCCAGATTCATTCCGCATCGCAGCCTTTCCTGAGAGCTCTCCTCTCC
AGGCATGGCAGATCTGTTTTTCCTCCTCTAATCTTTAGCCCAAGGGTCTT
TGTAGAATACCTGCCTATTTTTCCCCTGTCTTACACAGTACTTGTCATAC
AATGGATACTGAGATTGCCAAATGAAGGGCATAGATAATTCTGATGTTAG
AGTGCCCGGGCAAGCGAGTGCCACTTACAGCATGCAGTGTAGAATGAAAG
CTGACAATTCTCAAGACCTTTGATATATTGAGTCTTAACATCTCAAAGAA
CTCCAATATTTGAATCTCAGAAAAGTTAGAACCAGCACTACATATATGGA
AGCTTCCTTCACCAGGAATTAGAACCACTTAGAAGAACAGACCTGCGAGA
GCAGAGGAATGTCCCATGAAAACAAGCTGGGGACAGACAATCGAGAACTA
GGAAGGCAGATGTTGAGAGAGAGAAATGAGGAAGAATAAGGGCAGGGATG
AAGAAGAGAAAATAGGAGAGAAAGGGGGGAGGACAGAAAGAATGAAGGGG
AAGAGAGAGAGAAGAAAGATGAAAGGGAAGAATAGGAAGAAACTACCGAG
AGGAAGAATAAATGAGGAGATAGGGAAGAGAGTAATAGAACCTG

TCTTTGTCAATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTGTTGTTCAGTGTTT
GTGTTTGTGTGTGTGTGTGTGTGTATTTTCCTTCTCTGGGTTATGCTGGT
ATGAGATTATTGCTTGTGTTTTCATAAGTGTAGTTAACCTTCTCTGATTG
AAACTTTTCCTCTAGTATCTTCTGTAGAGCTGGATTTGTGGATTGATATT
ATTTAAATTTGACTTTATCATCTTCTTTTCTCTGTTTATGGTGGTTGAAA
TTTCTGTTGGGTATAGTAGTCTGGGCTGGCATCTATGGTCTCTTAGAGTT
TGCAGCATATCTGTTCAGGCCCTACTGGCTTTTAGAGTCTCCATTGAGAC
GCTGGGTATAATTCGAATAGGTCTACCTTTATATGCTATGTGGCCTTTTT
CTTTTACATTCTTTAATGTTATTTCTTTGTTCTCTTTGTTTAGTTATTTG
ATTACTATGTGGTAAGGGAACTTTCTTTTCTGGTCCAATCTATTTGGTGT
TCTGTAAACTTCTTGTACCTTTATAGGCATATCTTTCTTTAGGTTAAGAA
AATTTTCTTCTATGATTTTTTTTTTCCTGAGACAGGGTTTCTCTGTATAG
CTCTGGCTGTCCTGTAATTTACTTTGTAGACCATGTTGGGTGTGAATTCA
AAAATCCCCCTGTCTCTGCCTCCTGATTGTTGT

Query= MSMg01no527_d04.b1 MSMg01no527_d04.b1 CHROMAT_FILE:
MSMg01no527_d04.b1 PHD_FILE: MSMg01no527_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:21 2005
         (594 letters)



>mm_chr1_128818864_128819857
          Length = 994

 Score = 1125 bits (582), Expect = 0.0
 Identities = 588/590 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttgtctctttttgaaaagctacacacctttagcattctggtccagattcatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttgtctctttttgaaaagctacacacctttagcattctggtccagattcatt 264

                                                                       
Query: 65  ccgcatcgcagcctttcctgagagctctcctctccaggcatggcagatctgtttttcctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccgcatcgcagcctttcctgagagctctcctctccaggcatggcagatctgtttttcctc 324

                                                                       
Query: 125 ctctaatctttagcccaagggtctttgtagaatacctgcctatttttcccctgtcttaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctaatctttagcccaagggtctttgtagaatacctgcctatttttcccctgtcttaca 384

                                                                       
Query: 185 cagtacttgtcatacaatggatactgagattgccaaatgaagggcatagataattctgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtacttgtcatacaatggatactgagattgccaaatgaagggcatagataattctgat 444

                                                                       
Query: 245 gttagagtgcccgggcaagcgagtgccacttacagcatgcagtgtagaatgaaagctgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttagagtgcccgggcaagcgagtgccacttacagcatgcagtgtagaatgaaagctgac 504

                                                                       
Query: 305 aattctcaagacctttgatatattgagtcttaacatctcaaagaactccaatatttgaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aattctcaagacctttgatatattgagtcttaacatctcaaagaactccaatatttgaat 564

                                                                       
Query: 365 ctcagaaaagttagaaccagcactacatatatggaagcttccttcaccaggaattagaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcagaaaagttagaaccagcactacatatatggaagcttccttcaccaggaattagaac 624

                                                                       
Query: 425 cacttagaagaacagacctgcgagagcagaggaatgtcccatgaaaacaagctggggaca 484
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 cacttagaagaacagacctgcgagagcggaggaatgtcccatgaaaacaagctggggaca 684

                                                                       
Query: 485 gacaatcgagaactaggaaggcagatgttgagagagagaaatgaggaagaataagggcag 544
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 685 gacaatcgagaactaggaaggcagatgttgaaagagagaaatgaggaagaataagggcag 744

                                                             
Query: 545 ggatgaagaagagaaaataggagagaaaggggggaggacagaaagaatga 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggatgaagaagagaaaataggagagaaaggggggaggacagaaagaatga 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)