Query= MSMg01no527_e05.b1 MSMg01no527_e05.b1 CHROMAT_FILE:
MSMg01no527_e05.b1 PHD_FILE: MSMg01no527_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:27 2005
(574 letters)
>mm_chr1_24074570_24075546
Length = 977
Score = 913 bits (472), Expect = 0.0
Identities = 533/574 (92%), Gaps = 35/574 (6%)
Strand = Plus / Plus
Query: 4 ggaattcttgctgccattttcatcgatgcgcgtatttggtaaaaactaaaagcacaataa 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgctggtattttcatcgatgcgcgtatttggtaaaaactaaaagcacaataa 263
Query: 64 ataggttattttaaaatatatgttcccgtcactacattttgtatctattaaaataaaatt 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 ataggttattttaaaatatatgttcccgtctctacattttgtatctattaaaataaaatt 323
Query: 124 ctggcccaattctaccagttccctgtaacatttcccatatccacctatgaaatatta-a- 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 ctggcccaattctaccagttccctgtaacatttcccatatccacctatgaaatattacat 383
Query: 182 -cacagcatgaaaccaagagagagatttggcacatgtacagaagaacaatagagacataa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccacagcatgaaaccaagagagagatttggcacatgtacagaagaacaatagagacataa 443
Query: 241 acaaatatacaccgtagctttactgtatagcagtgactgtgatactaacctatggaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaaatatacaccgtagctttactgtatagcagtgactgtgatactaacctatggaatta 503
Query: 301 ttaagtcctctaagaacttcagcatgtaatttacttttctttaaaagataatgaaactgg 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 ttaagtcctctaagaacttcagcatgtaatttacttttctctaaaagataatgaaactgg 563
Query: 361 gctggcaaactgctgccacttctgatttcataacttaagttcaatttttacaactttcat 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctggcaaactgctgccactcctgatttcataacttaagttcaatttttacaactttcat 623
Query: 421 tgaaggacagaactgactcacttacacacacacacacacacacacacacacacacacaca 480
||||||||||||||||| |||||||||||||
Sbjct: 624 tgaaggacagaactgac------------------------------acacacacacaca 653
Query: 481 cacacacacacacacacacgtaaaaaaaaaatcaaagaaaagaaaatgtttctgattgtg 540
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 654 cacacacacacacacacacgtaaaaaaaa--tcaaagaaaagaaaatgtttctgattgtg 711
Query: 541 agtttgagaaaaacatcagataatagctttttaa 574
||||||||||| ||||||||||||||||||||||
Sbjct: 712 agtttgagaaagacatcagataatagctttttaa 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 977
Length adjustment: 10
Effective length of query: 564
Effective length of database: 967
Effective search space: 545388
Effective search space used: 545388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_e05.g1 MSMg01no527_e05.g1 CHROMAT_FILE:
MSMg01no527_e05.g1 PHD_FILE: MSMg01no527_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:27 2005
(568 letters)
>mm_chr1_24220911_24221876
Length = 966
Score = 1064 bits (550), Expect = 0.0
Identities = 563/568 (99%), Gaps = 2/568 (0%)
Strand = Plus / Minus
Query: 1 ttggagcctacatataattttacatagaacatttctgtttaaacaaaaaacaacaaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttggagcctacatataattttacatagaacatttctgtttaaacaaaaaacaacaaaatg 707
Query: 61 tcttgaatgtgcaatagggcctctcgttataaaaagtagtgactgcctactgctgtctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tcttgaatgtgcaatagggcctctcgttataaaaagtagtgactgcctactgctgtctga 647
Query: 121 atggaaacagagagtgttgaattcatataatgtactgctattaatccagatgctaaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atggaaacagagagtgttgaattcatataatgtactgctattaatccagatgctaaaaga 587
Query: 181 ggtaaatacctaatcattgaaaagatttgcttaatcttggtaaacaataaaaaaaaatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggtaaatacctaatcattgaaaagatttgcttaatcttggtaaacaataaaaaaaaatac 527
Query: 241 tttactggaggtccttgagcgccaacttctcccagttccccctggtcaccctcttcaccc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tttactggaggtccttgatcgccaacttctcccagttccccctggtcaccctcttcaccc 467
Query: 301 taaaatggaaaaaaaaaaaagaggatcacaatgaatgttcctctagcaaaggaatctagg 360
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 taaaatgg--aaaaaaaaaagaggatcacaatgaatgttcctctagcaaaggaatctagg 409
Query: 361 aatcggccaagtcttgctcagtacactttaagttcatttgacatcccccagagtgctcga 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 408 aatcggccaagtcttgctcagtacactttaagtgcatttgacatcccccagagtgctcga 349
Query: 421 ctgtgttttgttcagttatacagagctcatgttaattgcatcatactcagaggacagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctgtgttttgttcagttatacagagctcatgttaattgcatcatactcagaggacagaaa 289
Query: 481 taagtacacaaagagacaccaaaaaacatattacttggaagcgtttctttcaaagttttc 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 288 taagtacacaaagagacaccaaaaaacatactacttggaagcgtttctttcaaagttttc 229
Query: 541 tagagagaaagaagaagaaaaagagagc 568
||||||||||||||||||||||||||||
Sbjct: 228 tagagagaaagaagaagaaaaagagagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 966
Length adjustment: 10
Effective length of query: 558
Effective length of database: 956
Effective search space: 533448
Effective search space used: 533448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
