Query= MSMg01no527_f17.b1 MSMg01no527_f17.b1 CHROMAT_FILE:
MSMg01no527_f17.b1 PHD_FILE: MSMg01no527_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:34 2005
(569 letters)
>mm_chr1_190226565_190227532
Length = 968
Score = 1085 bits (561), Expect = 0.0
Identities = 564/565 (99%), Gaps = 1/565 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggtcttcatatttgcgtggcatctccccagcttccaatttatttctctcttaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtcttcatatttgcgtggcatctccccagcttccaatttatttctctcttaa 264
Query: 65 tgctttggtttattcttcttggtatttccatggttagccattacaggatacttttgcaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctttggtttattcttcttggtatttccatggttagccattacaggatacttttgcaat 324
Query: 125 tacccagactgatggccaagtatgaatttattttttttagaattagattgtaacagagct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacccagactgatggccaagtatgaatttattttttttagaattagattgtaacagagct 384
Query: 185 gtgtattcagcatgtgtaggattgattgatttcttccaataaaagctctcatttaaagga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtattcagcatgtgtaggattgattgatttcttccaataaaagctctcatttaaagga 444
Query: 245 atgcctaacttcccatcgtctcatacatttagtgaaccagaaatattttctaaatattca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgcctaacttcccatcgtctcatacatttagtgaaccagaaatattttctaaatattca 504
Query: 305 gcatcagtgttttaaaaggtgagttcattcaagcctctataaatatgtaatcataaggaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcatcagtgttttaaaaggtgagttcattcaagcctctataaatatgtaatcataaggaa 564
Query: 365 aatttgaaaatgtactaacatttatttcatgtgctggttattatttgagtctggaaagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatttgaaaatgtactaacatttatttcatgtgctggttattatttgagtctggaaagaa 624
Query: 425 gttcaagaaatcatgttaatgttacactttcattccaaataccttcttttatgacttctt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttcaagaaatcatgttaatgttacactttcattccaaataccttcttttatgacttctt 684
Query: 485 tttataaaagttgtatggatctatgtaagagggggaagcatccctttgtgtatatacacc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttataaaagttgtatggatctatgtaagagggggaagcatccctttgtgtatatacacc 744
Query: 545 acatttctttttttttaacctagcc 569
||||||||||||||| |||||||||
Sbjct: 745 acatttctttttttt-aacctagcc 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space: 535522
Effective search space used: 535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_f17.g1 MSMg01no527_f17.g1 CHROMAT_FILE:
MSMg01no527_f17.g1 PHD_FILE: MSMg01no527_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:34 2005
(604 letters)
>mm_chr1_190299721_190300724
Length = 1004
Score = 654 bits (338), Expect = 0.0
Identities = 359/368 (97%), Gaps = 4/368 (1%)
Strand = Plus / Minus
Query: 1 taagacattgataagaagagtagccagagcaagacgaagcacttgaggatgaagaatctt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 368 taagacattgataagaagagtagccagagcaggacgaagcacttgaggatgaagaatctt 309
Query: 61 catagagccctactcaggaaggaaccagtacagaaggaagcaaaaaacatgtactgagga 120
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 308 catagagccctactcaggaaggaaccagtacagaaggaagcaaagaacatatactgagga 249
Query: 121 caaagcagctcttgttttcaatttcctgacagcattgaaccaggggtctgtaagggaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 caaagcagctcttgttttcaatttcctgacagcattgaaccaggggtctgtaagggaagg 189
Query: 181 ttctgatgttaaaagtcctgttccccaattggctcttgatgtatcagtaaagaaggctgg 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 188 ttctgatgttaaaagtcctgttccccaattggttcttgatgtatcagtaaagaaggctgg 129
Query: 241 gagtcaattgacgagtggaaggtacaggtgggatttcagggtcccaagaggaaaaggcag 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gagtcaattgatgagtggaaggtacaggtgggatttcagggtcccaagaggaaaaggcag 69
Query: 301 acac----aagaagagctttggttccatgctttggaggaagaagaccacagcaatcatgt 356
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 acacaaggaagaagagctttggttccatgctttggaggaagaagaccacagcaatcatgt 9
Query: 357 gaggtctt 364
||||||||
Sbjct: 8 gaggtctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
