BAC Information

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BAC

Clone NameMSMg01-527I11
Chromosome1 (Build37)
Map Location 100,580,778 - 100,730,711
singlet/doubletdoublet
Overlap genenone
Upstream geneHisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527I11.T7 (MSMg01no527_i11.b1)MSMg01-527I11.TJ (MSMg01no527_i11.g1)
ACCAG596860AG596861
length753758
length of high quality
(start - end)		704 (50 - 753)664 (81 - 744)
definitionCHROMAT_FILE: MSMg01no527_i11.b1 PHD_FILE: MSMg01no527_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:47 2005CHROMAT_FILE: MSMg01no527_i11.g1 PHD_FILE: MSMg01no527_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:48 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(100,730,340 - 100,730,711)(100,580,778 - 100,581,441)
sequence
NGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATTGTTCCTTATCGACCTCTATAAGAAAACACAGTAAGAA
CAATTGCACAGATTCAACATTATCCACTGCCAAACCATACTTGATTGAGT
ACTTTTAATTTAGTCACAGAGAAGTTTTTAGGACAAGAAAAGAATACAGC
CAGATTATTGGTGGAAGTATCAGTTTCTAATACGTTCCCTCTCTGAAAAC
TCTTGAGTCAGGCCTCCATAGTCCACATTAGTCTTAGTCTCCCAGGTTCC
TAGAAAAGCAACCCACTACACTCTGCATACAAGATTCAACCAATTTTATA
GCCCAAAGTTTCAAATTCTTCCACATCCTTCCAAAAACAATGTAGATAGA
TTCTTCAGAGAAAAACCCCAATCCTTGCACTAAATCCATAGTTACTTTTT
TCTCTGTGATATGACACTATGACAGAAGTCAGAATTATAAAAGAAATAAC
TTACTTTATTTATAGTTTCAAAAGAATGAGAGTCCTTTATGTTAGGAGGG
AAGCATGGTAGCAAGAAGCAGGCACAGTAGCAAGTTTTGGCGAGGACTAG
TATGCCAGTCAAATCTTCCTTTGTCTTCCCATCTGTTTCCTCTGTTTTAT
AATTTATAAAATCTCACTTTTCAAATAACCTGCCTTATGTCTCAGGTAAC
CTCACTTACTGGATTTTGTTCTTATGGCTTTTCTTTTCATTGAAAATTTG
TGC

TTCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTTTCTCTGAGTCTTC
CATTGAAGTGCATTATAGTCCTATTGGTTTGCATTATGGTTTTCACATAT
ATTTTGTGGGAGACTTTCATATGAGGAAGTAAATTGCTAAATTCCCTTTC
ATTGGAAAAAATGATCCCTGCATCACAAATCTGGATCATTTAAAATATCA
TTGTTTAAAAGACCTGCTTTAAAATAGTTGTAATATATAAAACCTATTCA
TCCATTTTCAGACCTTTGTTGGTGAGGTTTTGTGACATTGTTGTGGAAGA
ACTATAATCTTCAATAGTGTATGTAATTTAAAATGCTATAAATTCAAATT
GTAATAACCCTGTAAATAATATATATGTATTATAAGAGTATACTATATAG
TAAGTCATAATAATGTTATGTGATTCTGATACAAGTGCAAAACTTATGGT
TGTACTGATTGTCTTCAGCTTGTGGAACTTTTCACATTGTTATAGGGTCT
GTCTTAAATAATGTTTAGGATTTCGGTTGCTGTGGTAAGCCACCTTGACC
ATAAGAAACTTAGATGAGGAAATATTTATTTGGCTTATAAATCCAGGTCA
CAGACCATAACTGAATGCATTCTGGGCAGAAACTCAAGTAGAGCCAATTA
TGGAACACTTCTTGCTGGCTTGTTTGCATATACTCAGCTAGTCTTCCTGT
ATAGTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_i11.b1 MSMg01no527_i11.b1 CHROMAT_FILE:
MSMg01no527_i11.b1 PHD_FILE: MSMg01no527_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:47 2005
         (704 letters)



>mm_chr1_100729608_100730711
          Length = 1104

 Score =  712 bits (368), Expect = 0.0
 Identities = 371/372 (99%)
 Strand = Plus / Minus

                                                                        
Query: 333  caaaaacaatgtagatagattcttcagagaaaaaccccaatccttgcactaaatccatag 392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 caaaaacaatgtagatagattcttcagagaaaaaccccaatccttgcactaaatccatag 1045

                                                                        
Query: 393  ttacttttttctctgtgatatgacactatgacagaagtcagaattataaaagaaataact 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 ttacttttttctctgtgatatgacactatgacagaagtcagaattataaaagaaataact 985

                                                                        
Query: 453  tactttatttatagtttcaaaagaatgagagtcctttatgttaggagggaagcatggtag 512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984  tactttatttatagtttcaaaagaatgagagtcctttatgttaggagggaagcatggtag 925

                                                                        
Query: 513  caagaagcaggcacagtagcaagttttggcgaggactagtatgccagtcaaatcttcctt 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  caagaagcaggcacagtagcaagttttggcgaggactagtatgccagtcaaatcttcctt 865

                                                                        
Query: 573  tgtcttcccatctgtttcctctgttttataatttataaaatctcacttttcaaataacct 632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864  tgtcttcccatctgtttcctctgttttataatttataaaatctcacttttcaaataacct 805

                                                                        
Query: 633  gccttatgtctcaggtaacctcacttactggattttgttcttatggcttttcttttcatt 692
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 804  gccttatgtctcaggtaacctcacttactggattttgttcttagggcttttcttttcatt 745

                        
Query: 693  gaaaatttgtgc 704
            ||||||||||||
Sbjct: 744  gaaaatttgtgc 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no527_i11.g1 MSMg01no527_i11.g1 CHROMAT_FILE:
MSMg01no527_i11.g1 PHD_FILE: MSMg01no527_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:48 2005
         (664 letters)



>mm_chr1_100580578_100581641
          Length = 1064

 Score = 1222 bits (632), Expect = 0.0
 Identities = 656/664 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctttctctgagtcttccattgaagtgcattatagtcctattggtttgcattatggt 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 201 ttttctttctctgagtcttccattgaagtgcattatagtcctagtggtttacattatggt 260

                                                                       
Query: 61  tttcacatatattttgtgggagactttcatatgaggaagtaaattgctaaattccctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcacatatattttgtgggagactttcatatgaggaagtaaattgctaaattccctttc 320

                                                                       
Query: 121 attggaaaaaatgatccctgcatcacaaatctggatcatttaaaatatcattgtttaaaa 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggaaaaaaagatccctgcatcacaaatctggatcatttaaaatatcattgtttaaaa 380

                                                                       
Query: 181 gacctgctttaaaatagttgtaatatataaaacctattcatccattttcagacctttgtt 240
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacctgatttaaaatagttctaatatataaaacctattcatccattttcagacctttgtt 440

                                                                       
Query: 241 ggtgaggttttgtgacattgttgtggaagaactataatcttcaatagtgtatgtaattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgaggttttgtgacattgttgtggaagaactataatcttcaatagtgtatgtaattta 500

                                                                       
Query: 301 aaatgctataaattcaaattgtaataaccctgtaaataatatatatgtattataagagta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 aaatgctataaattcaaattgtaataaccctgtaaataatatatatgtattatacgagta 560

                                                                       
Query: 361 tactatatagtaagtcataataatgttatgtgattctgatacaagtgcaaaacttatggt 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tactatatagtaagtcataataatgttatgtgattctgatataagtgcaaaacttatggt 620

                                                                       
Query: 421 tgtactgattgtcttcagcttgtggaacttttcacattgttatagggtctgtcttaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtactgattgtcttcagcttgtggaacttttcacattgttatagggtctgtcttaaata 680

                                                                       
Query: 481 atgtttaggatttcggttgctgtggtaagccaccttgaccataagaaacttagatgagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtttaggatttcggttgctgtggtaagccaccttgaccataagaaacttagatgagga 740

                                                                       
Query: 541 aatatttatttggcttataaatccaggtcacagaccataactgaatgcattctgggcaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatatttatttggcttataaatccaggtcacagaccataactgaatgcattctgggcaga 800

                                                                       
Query: 601 aactcaagtagagccaattatggaacacttcttgctggcttgtttgcatatactcagcta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 801 aactcaagtagagccaattatggaacacttcttgctggcttgtttgcatatgctcagcta 860

               
Query: 661 gtct 664
           ||||
Sbjct: 861 gtct 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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