BAC Information

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BAC

Clone NameMSMg01-527I22
Chromosome1 (Build37)
Map Location 173,509,563 - 173,661,402
singlet/doubletdoublet
Overlap geneCd244, Ly9, Slamf7, Cd48, LOC100041098
Upstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
Downstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527I22.T7 (MSMg01no527_i22.b1)MSMg01-527I22.TJ (MSMg01no527_i22.g1)
ACCAG596882AG596883
length757766
length of high quality
(start - end)		579 (68 - 646)685 (76 - 760)
definitionCHROMAT_FILE: MSMg01no527_i22.b1 PHD_FILE: MSMg01no527_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:50 2005CHROMAT_FILE: MSMg01no527_i22.g1 PHD_FILE: MSMg01no527_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,509,563 - 173,510,141)(173,660,801 - 173,661,402)
sequence
GACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGNN
GGAANCAGCTTATTTCTTTCCTCTGATTCAAAAAACTGGAGTCCTGGTAC
TAATTATCCTAATGGTAACATTAATCATTATCTCTATTAAGCAAAGAATA
GATGTGGATTAGTCTTGTAAAAAAAACTTATTTGGAATTAATAGTAATGG
CCATTTTCTTAATAAATCTCACTTGACTCTCTTCTGATGTCTACAAATGA
GGAAACTAAGACTAGGGTTAACTGATGTGTTCAAGGCCACATAGCTGAAT
AGTAAGAATGTTGAGCCAAACAGTTTCTCAATTTCCATCCTTCCTCTTCC
TGCCATGCCTCTAACTCCTGATGGTACAGATGTTCATGCATGGGTTAGAA
AGACATTCTGTAATATTGGCAGATCGCATGACTTCATTGCTAACCAGTGT
CAGGTGTTTCCCTTCCAAGGGAAAAGGCTTAGTGATGGACGGCACTGGAA
AGTTTCTGATAAAAACTGGCTCTCCCTGCCATCTACTCTCCCCTCTCTCC
TCTCCTCCCTTCTCTTCTTCTCCATCTCTGTTCTTCACTTCTCATTTGAT
TTTCCTCTCCTCTCCCCTCCCCTCCTCTCCCCTCCCCTCCCCTCCCCTCC
CATCCCNTCCCCTCCNNTCTTNCCCCCTCCNCCCTCTTCTTTTTTCTTTT
TCTTTTTCCCTATTTTTTTTTCCCTCTTTTTTTTTTCCTCTTTTTTTTTC
TCTTTTC

NACAATGAAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGAAGGTTGCAGGTTAAATCTGT
TGAGGGGCTACAGTTTTGTTTTGTAGTATTGAGAATAGCACCCAGAGCTT
TGCATATGCTGTGTAAGTGCTCCACCACTGAGCTATCCCTCCAGCCTCAT
CTACTAAGTATTTTGTTTGTTTTTCCCATTACCTTGGAGTTTACTTAAAC
TAAGAAAAGGGTCATAATGTTTTCATTCTATTCTTGGTTCTTCTAATAAC
AATTGTGACAAACAACAGAAAGAATTAAAGAAAACTACACTTGGGGGTCT
GGTTCCATATGGTTTCACAACCACATTAATCTATGACTTCAGTTCTAGAA
GTTCTGACAACCTCTTCTGGCCTCTGAGGGTAGCAGACAGGCACATGTTG
CACATACATATATATGTGCAGGCAAAATAATTCATACACATAAAAAGATT
AGAAAAACATTTAAATGTTGTACTTGTGGTCCATACAAAATGTCAATATC
TTGGGTTGTACATATTTAAAGAAATACCTCACTTTTCAAAATACTATACT
AGCCATACATAGAGGCATGCCTGTATGTGGCTCCAGGGATGCAATTTAGA
AAAACAAAACACTGATTTTCTTTAAAAATCACTGAGCAAGAAAAACAACA
TTGAACTTCTATATTGATTCTATACAGCTTCTATGAAGTATAAAATCTAA
GTATAAATCTTGACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_i22.b1 MSMg01no527_i22.b1 CHROMAT_FILE:
MSMg01no527_i22.b1 PHD_FILE: MSMg01no527_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:50 2005
         (579 letters)



>mm_chr1_173509363_173510341
          Length = 979

 Score = 1120 bits (579), Expect = 0.0
 Identities = 579/579 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctctgattcaaaaaactggagtcctggtactaattatcctaatggtaacattaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctctgattcaaaaaactggagtcctggtactaattatcctaatggtaacattaatca 260

                                                                       
Query: 61  ttatctctattaagcaaagaatagatgtggattagtcttgtaaaaaaaacttatttggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatctctattaagcaaagaatagatgtggattagtcttgtaaaaaaaacttatttggaa 320

                                                                       
Query: 121 ttaatagtaatggccattttcttaataaatctcacttgactctcttctgatgtctacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatagtaatggccattttcttaataaatctcacttgactctcttctgatgtctacaaa 380

                                                                       
Query: 181 tgaggaaactaagactagggttaactgatgtgttcaaggccacatagctgaatagtaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggaaactaagactagggttaactgatgtgttcaaggccacatagctgaatagtaaga 440

                                                                       
Query: 241 atgttgagccaaacagtttctcaatttccatccttcctcttcctgccatgcctctaactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgttgagccaaacagtttctcaatttccatccttcctcttcctgccatgcctctaactc 500

                                                                       
Query: 301 ctgatggtacagatgttcatgcatgggttagaaagacattctgtaatattggcagatcgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgatggtacagatgttcatgcatgggttagaaagacattctgtaatattggcagatcgc 560

                                                                       
Query: 361 atgacttcattgctaaccagtgtcaggtgtttcccttccaagggaaaaggcttagtgatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgacttcattgctaaccagtgtcaggtgtttcccttccaagggaaaaggcttagtgatg 620

                                                                       
Query: 421 gacggcactggaaagtttctgataaaaactggctctccctgccatctactctcccctctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacggcactggaaagtttctgataaaaactggctctccctgccatctactctcccctctc 680

                                                                       
Query: 481 tcctctcctcccttctcttcttctccatctctgttcttcacttctcatttgattttcctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctctcctcccttctcttcttctccatctctgttcttcacttctcatttgattttcctc 740

                                                  
Query: 541 tcctctcccctcccctcctctcccctcccctcccctccc 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctctcccctcccctcctctcccctcccctcccctccc 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_i22.g1 MSMg01no527_i22.g1 CHROMAT_FILE:
MSMg01no527_i22.g1 PHD_FILE: MSMg01no527_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:50 2005
         (685 letters)



>mm_chr1_173660801_173661885
          Length = 1085

 Score = 1164 bits (602), Expect = 0.0
 Identities = 602/602 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaaggttgcaggttaaatctgttgaggggctacagttttgttttgtagtattgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 attgaaggttgcaggttaaatctgttgaggggctacagttttgttttgtagtattgagaa 543

                                                                       
Query: 61  tagcacccagagctttgcatatgctgtgtaagtgctccaccactgagctatccctccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tagcacccagagctttgcatatgctgtgtaagtgctccaccactgagctatccctccagc 483

                                                                       
Query: 121 ctcatctactaagtattttgtttgtttttcccattaccttggagtttacttaaactaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctcatctactaagtattttgtttgtttttcccattaccttggagtttacttaaactaaga 423

                                                                       
Query: 181 aaagggtcataatgttttcattctattcttggttcttctaataacaattgtgacaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaagggtcataatgttttcattctattcttggttcttctaataacaattgtgacaaacaa 363

                                                                       
Query: 241 cagaaagaattaaagaaaactacacttgggggtctggttccatatggtttcacaaccaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cagaaagaattaaagaaaactacacttgggggtctggttccatatggtttcacaaccaca 303

                                                                       
Query: 301 ttaatctatgacttcagttctagaagttctgacaacctcttctggcctctgagggtagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttaatctatgacttcagttctagaagttctgacaacctcttctggcctctgagggtagca 243

                                                                       
Query: 361 gacaggcacatgttgcacatacatatatatgtgcaggcaaaataattcatacacataaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gacaggcacatgttgcacatacatatatatgtgcaggcaaaataattcatacacataaaa 183

                                                                       
Query: 421 agattagaaaaacatttaaatgttgtacttgtggtccatacaaaatgtcaatatcttggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agattagaaaaacatttaaatgttgtacttgtggtccatacaaaatgtcaatatcttggg 123

                                                                       
Query: 481 ttgtacatatttaaagaaatacctcacttttcaaaatactatactagccatacatagagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ttgtacatatttaaagaaatacctcacttttcaaaatactatactagccatacatagagg 63

                                                                       
Query: 541 catgcctgtatgtggctccagggatgcaatttagaaaaacaaaacactgattttctttaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  catgcctgtatgtggctccagggatgcaatttagaaaaacaaaacactgattttctttaa 3

             
Query: 601 aa 602
           ||
Sbjct: 2   aa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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