BAC Information

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BAC

Clone NameMSMg01-527N11
Chromosome1 (Build37)
Map Location 31,403,710 - 31,404,358
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527N11.T7 (MSMg01no527_n11.b1)MSMg01-527N11.TJ (MSMg01no527_n11.g1)
ACCAG597099AG597100
length676747
length of high quality
(start - end)
---669 (77 - 745)
definitionCHROMAT_FILE: MSMg01no527_n11.b1 PHD_FILE: MSMg01no527_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:15 2005CHROMAT_FILE: MSMg01no527_n11.g1 PHD_FILE: MSMg01no527_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCGGCGCATCACTCCTTTCGGGAGAGCGCGAGTCGGAGAGCCANCAC
TCTGATTCAGGAGATCTCTGAATAANATCCTCAACACCAAATCTACACAA
TCCACAAAAATTCACAACCTTTGAANTCACTGGGATTGGGTTGTTTCTCC
TTAAATACACTCCCTAGGTACTATGTTTAAAGATTAATTTGAAGAACTTA
AACGATTCCAGGAAAACCCCCTTTCCCCGGCCCGTGGCCCCCCGGGGGGT
TTTAAAAAAAAAACNGNCTTTTCCCCGGGGCCCCCCTTTTAAAAAAATTT
TCCCCCCCCCCAAAATGGGAAATAAATTTTCTCTCTTCCCCCAAAAAAAA
AACCCTCATGGGGGGTCCCCCCCCCCCAAATTTTTTAAAGGGGGAAAAAA
AAACGTGTTTTGGCAAAACAAAAAAAAAAAAAAATTTTTTTTAAAACAAA
GAAGGGGGGGGGGGGGGCCCCCCCCCCCTTTTCCAAAATACTCCCCCCCC
CCTTTTTTTTCTTTTTTTTTATAATAATAAAATCTCCCCGGCGGAAANNN
CCCCCCCGCCCCCTCCCCCCCCCCCAAATAATTATTNATCCTCCCCCCCC
CCCTCTTCCNCCCATAAAAAAAAAAAATTATTTTTCTTNTTCCCCCCCCC
CCCCCTCTTCTTTCTTGTGTTTGGTG
TTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGGAAAGGGGATTCTAAGTTG
GATCAAATTGGATATTGAGCTATGTTAGGACTGGAATGTGGCTTTAGTTA
CTTTGCCAGAGTCTCTGCTTTACGATGATGTGAGGGTTAGTTCTTCTCTG
GATTTATTCTGAAACTGTCTTCTCCCACTCCCGCTCATCTTAGAATTCTT
TTTCCTGTCTGTTTCTCTTCTCTTCTCCTCCTTGCGCCTTTCCTTTCTCC
TCGTCCTCCACTCTCCTTTCCCTGCTTCTTCTATTTACTTTCTTCAAGAT
GCTGTGTAGCAGTTAAACCTGGGTTAATTATGCTGGACTCTTGTGATACT
ATTGTTTCTGATTCCCTAGTTCTGGGATATAGATGTGTACCACCACAGCC
AGCTATATAAGGCTTCTCATCAAAACACTGAGATTAAACCAAACCAAACC
AAACCAAACCAAACCAAACCAAACCAACCCAACCCAAAACCTATGTTCTC
CATTTTCCAGCCTAATTCTAACAATTCAACCAGAAAATATGTCAAGCTCC
CAGGGCACAGGGGCAGGGCATAGAGAATTGACTCGACAATGTGGTCTTTT
TTTCTGATTCTAATACACATATAGGCAGAATTAAAACTCACCCTAGCTTT
CCTTTATCCCAGATTAGAATTGCTCTTTGCCAGCCTGCACTCAGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_n11.g1 MSMg01no527_n11.g1 CHROMAT_FILE:
MSMg01no527_n11.g1 PHD_FILE: MSMg01no527_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:15 2005
         (669 letters)



>mm_chr1_31403510_31404578
          Length = 1069

 Score = 1151 bits (595), Expect = 0.0
 Identities = 641/669 (95%), Gaps = 20/669 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgggaaaggggattctaagttggatcaaattggatattgagctatgttaggactggaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgggaaaggggcttctaagttggatcaaattggatattgagctatgttaggactggaa 260

                                                                       
Query: 61  tgtggctttagttactttgccagagtctctgctttacgatgatgtgagggttagttcttc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcggctttagttactttgccagagtctctgctttacgatgatgtgagggttagttcttc 320

                                                                       
Query: 121 tctggatttattctgaaactgtcttctcccactcccgctcatcttagaattctttttcct 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tctggatttattctgaaactgtcttctcccactccctctcatcttagaattctttttcct 380

                                                                       
Query: 181 gtctgtttctcttctcttctcctccttgcgcctttcctttctcctcgtcctccactctcc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgtttctcttctcttctcctcctttcgcctttcctttctcctcgtcctccactctcc 440

                                                                       
Query: 241 tttccctgcttcttctatttactttcttcaagatgctgtgtagcagttaaacctgggtta 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccctgcttcttctatttactttcttcaagatgctgtgtagcagttaaacctgggtta 500

                                                                       
Query: 301 attatgctggactcttgtgatactattgtttctgattccctagttctgggatatagatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatgctggactcttgtgatactattgtttctgattccctagttctgggatatagatgt 560

                                                                       
Query: 361 gtaccaccacagccagctatataaggcttctcatcaaaacactgagattaaaccaaacca 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaccaccacagctagctatataaggcttctcatcaaaacactgagattaaaccaaacca 620

                                                                       
Query: 421 aaccaaaccaaaccaaaccaaaccaaaccaacccaacccaaaacctatgttctccatttt 480
           |||||||||||                    |||||||||||||||||||||||||||||
Sbjct: 621 aaccaaaccaa--------------------cccaacccaaaacctatgttctccatttt 660

                                                                       
Query: 481 ccagcctaattctaacaattcaaccagaaaatatgtcaagctcccagggcacaggggcag 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 661 ccagcctaattctaacaattcaactagaaaatatgtcaagctcccagggcacaggcgcag 720

                                                                       
Query: 541 ggcatagagaattgactcgacaatgtggtctttttttctgattctaatacacatataggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggcatagagaattgactcgacaatgtggtctttttttctgattctaatacacatataggc 780

                                                                       
Query: 601 agaattaaaactcaccctagctttcctttatcccagattagaattgctctttgccagcct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agaattaaaactcaccctagctttcctttatcccagattagaattgctctttgccagcct 840

                    
Query: 661 gcactcaga 669
           |||||||||
Sbjct: 841 gcactcaga 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)