NNNTTTGCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXGTCTGCCTGGTCTACAGAGCAAGTTCTGGGCTAGC
CTAAGCCACAGAGAGAAACCCTGTCTCAAATAAAATAAAATAAAATAAAA
TAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAA
TAAAATAAAAAAGGTCTTCCATGCTCAGGCTGCCTCTCTTACTGGACAAT
ATTATTTTAGCCTCTGCTCTCTCTTTCTTCTTCTGGGTTCTGCACTACAC
TCCTTGTCTAACCATGTTGCCTGCAAGATCCTCTGAAATCGCCAATGTGA
TCACATCTTACCTGTTCTAGAAGACACCAGTGGCTCCCCACAAGGGCAGA
ACTCAACCATTTGGAGGGCACATGGGATTTTGTCTATACTTTGTTACCCT
GACCAAACTGACTTCTCTTATTCAGGCCACTCTTATCTTTATCACGCGCT
CTCCGCAGAGTTCCTTGAGACTTCGCTGCGCCATGGGCTTATGTTGTGTG
CTCTGTTTTCAGTACTTTCTTCCTCCACATGGCAATATCCTCCGATGTTG
CAAAGCACATCTTCAAACATTCTTCTCTACAAGGCCTTCTTTGATCTGTT
TCAGGAGGTATAAATCTTCCAACGACTCTCGTCTACCCTCAGAACATTCT
CCCCCTCTGTTTGAAGTCTTATCTAGACGTTCGAGAGCTATCTGATGATT
GAGAAAGGACTG

NNNNNNCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCCAGGTGGTTCCCGTT
AGACCTTTTGTGTTTGCATTCCTCTGTTTTATGTAAGATTCCGGTTACTT
CGTTTGTACCTTGTAAATATGTCACCCAACTTCCTTATTGTCTTCTGCAT
AGAAAGTCTGATGCTCGATTTGACAAAATACATTCAGATCCAACACAACC
TCTCCTGTGTGCATCTGTCTGTCAATTCATCCAACGCTTTGCCCACCCGC
AACGAGAGACCCGTTCCACGCAGACAAAGGGGCCCAGAGGGTCTAATTTC
TGCACAAAGATGAATATATCTAGTTAACTCTGCCTTGCTTTGTATGGTTG
AATGGCCAAAGTGAGCGGCATTAGCGTTTTTATAAGATGATTACTCTTGT
AGTAATCTTAATTATCAATATATGGGCGAGTTAAAAAGCTTAAGCTTTTG
ATCAAATTGTAGTCAATGGGACACTGGCAATTTTAACCATAATTTTAAGT
TTCCGTTGTAATATTAGAATATATCTATAACTTTTGGAAAGTAAGACCCA
ATTTTAAACAATTTATTCTCTTTAAAATCAATACTAGAAACATCACTATC
ATGTTACGAAGTTTGGCTGCCAATTCATGAATGCATGACAGTGCAAATTT
TAATGTTTCATTAAAGAGACATTGTTTTTAAATCTTCTCTATAAAGTTAC
TT

Query= MSMg01no527_n24.b1 MSMg01no527_n24.b1 CHROMAT_FILE:
MSMg01no527_n24.b1 PHD_FILE: MSMg01no527_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:18 2005
         (585 letters)



>mm_chr1_51654273_51655257
          Length = 985

 Score =  779 bits (403), Expect = 0.0
 Identities = 503/581 (86%), Gaps = 70/581 (12%)
 Strand = Plus / Minus

                                                                       
Query: 5   gcctggtctacagagcaagttctgggctagcctaagccacagagagaaaccctgtctcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 637 gcctggtctacagagcaagttctgggctagcctaagccacagagagaaaccctgtctc-- 580

                                                                       
Query: 65  ataaaataaaataaaataaaataaaataaaataaaataaaataaaataaaataaaataaa 124
                                  |||||||||||||||||||||||||||||||||||||
Sbjct: 579 -----------------------aaataaaataaaataaaataaaataaaataaaataaa 543

                                                                       
Query: 125 ataaaataaaataaaataaaaaaggtcttccatgctcaggctgcctctcttactggacaa 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 542 ataaaataaaataaaataaaaaaggtctgccatgctcaggctgcctctcttactggacaa 483

                                                                       
Query: 185 tattattttagcctctgctctctctttcttcttctgggttctgcactacactccttgtct 244
           || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 482 tactattttagcctctgctctctctctcttcttctgggttctgcactacactccttgtct 423

                                                                       
Query: 245 aaccatgttgcctgcaagatcctctgaaatcgccaatgtgatcacatcttacctgttcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaccatgttgcctgcaagatcctctgaaatcgccaatgtgatcacatcttacctgttcta 363

                                                                       
Query: 305 gaagacaccagtggctccccacaagggcagaactcaaccatttggagggcacatgggatt 364
           ||||||||||||||                  ||||||||||||||||||||||||||||
Sbjct: 362 gaagacaccagtgg------------------ctcaaccatttggagggcacatgggatt 321

                                                                       
Query: 365 ttgtctatactttgttaccctgaccaaactgacttctcttattcaggccactcttatctt 424
           ||||||| ||||| ||||||||                           |||||||||||
Sbjct: 320 ttgtctacactttattaccctg---------------------------actcttatctt 288

                                                                       
Query: 425 tatcacgcgctctccgcagagttccttgagacttcgctgcgccatgggcttatgttgtgt 484
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tatcacgggctctccgcagagttccttgagacttcgctgcgccatgggcttatgttgtgt 228

                                                                       
Query: 485 gctctgttttcagtactttcttcctccacatggcaatatcctccgatgttgcaaagcaca 544
           ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 227 gctctgttttcagtactttcttcctccacgtggcaatatcctccgaagttgcaaagcaca 168

                                                    
Query: 545 tcttcaaacattcttctctacaaggccttctttgatctgtt 585
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tcttcaaacattcttctctacaaggccttctttgatctgtt 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)