NNNNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTTTGTGTTAACCTTCTATTGCTGGGGCCCACTCTGAGGAA
TGGTTAATAACCTAGTGAGACTTCATTGGAGAAAATTAGTTATTCTGTTG
GAAGTGGTTGCCATCAGATTGTTAGGAATGAACAATCATGCCCACTTTCC
TCTCAATTCACTGAGACCCAATTTAGTTTGAGTTTGTGAAGGCCATGTGC
ATGTTGCCATAGTTATTTTGAGTTCATTTGTACATTAGTACTGTTCTACC
CAGAAGACATTATTTGATAACTTTTAAAAATGTTACTGCTATTAATAATA
TTTTATTAATATTTTATATTTTAATCTAAAAATGTCTGGAAATATTTGGT
ATAAGCGAAAAAACTGATCACATTAGTTCAGTCATCACAAATAATGGACT
GCAACATTTAAAATTTCCCAGAAGTCCCTACTACTCAGTGTACCATCAGA
AGAGAATTCCAGATCTCCTGGAATTAGAATTATAGATGGTTTTAATGAAG
CCACCACGTGGGTGTTAGAAACTGAACCTGTGTCCTCTGCAAAAGCAGCA
AGTGTTCTTAAATGCTGAACCACCCATCTAGCCTAACCCATCTTTAAGAC
AGGATCTCTCACGTAATGTAAAAGTTACAGATTCTGTTGGACTGGTTGGC
TAGCAGAACAGAAAAATCCTCCTGGTTCTGTGTAAACAACATTAG

NNNNAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAATCATGGAGGATATCT
TAGAACTACCAATATGTTAAAACAGCATACTTTCTGACTGCATTTAAATA
TTTCTCCTTGTAGCCACAGACAAGGGTACTCCTCAACCCTCCTTAAAGAA
ACAGTCCTTGCAACAGACCTGTTTAGTTTTACCTTTTCTTTCTTTTTTTA
AATTGAATTATTTTATTTATTTATTTATTTATACTCCAAATGTTAGCCCA
CTTCCTGGTACCCCTTTCACAGAGATCTTCATCCAATCCTGAGATCTATC
GTCCCTGTTAGGGTGCTTATCCACTTACCTACCTCCTCATCCTCTCACCT
ATGCCCACTTTACCCCTACCCCAGCATCTCCCTACCATGAGGAATCATGT
ATCTATAGGATTGGGCACATCCTCTCCCACTGATGCAAAAGAAGACAGAC
CTCTGCTAAATATGTGCTAGGGGCCATTGACCAGTCCAAGCATGCTTTTT
AGGTGGTGGCTTAGTCTCTGGGAGTTCTTAGTTGATACTGTAGTTTTACC
TCCGGGGTTGCCATTCCCTTCATCTTTTTTAATCCTTCCCTAACTCTTCC
ATAGGAGTCCCCTATCTCAGCCTAGTGATTAGTTGTAAGTAACTGCATCT
GTCTCAGTCAGCATCTGGTAGAGCCTCTCAGAGGACAGTCATGCTATAC

Query= MSMg01no528_c21.b1 MSMg01no528_c21.b1 CHROMAT_FILE:
MSMg01no528_c21.b1 PHD_FILE: MSMg01no528_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:42 2005
         (660 letters)



>mm_chr1_110398765_110399824
          Length = 1060

 Score = 1253 bits (648), Expect = 0.0
 Identities = 654/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattttgtgttaaccttctattgctggggcccactctgaggaatggttaataacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttgtgttaaccttctattgctggggcccactctgaggaatggttaataacc 264

                                                                       
Query: 65  tagtgagacttcattggagaaaattagttattctgttggaagtggttgccatcagattgt 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtgagacttctttggagaaaattagttattctgttggaagtggttgccatcagattgt 324

                                                                       
Query: 125 taggaatgaacaatcatgcccactttcctctcaattcactgagacccaatttagtttgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggaatgaacaatcatgcccactttcctctcaattcactgagacccaatttagtttgag 384

                                                                       
Query: 185 tttgtgaaggccatgtgcatgttgccatagttattttgagttcatttgtacattagtact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgtgaaggccatgtgcatgttgccatagttattttgagttcatttgtacattagtact 444

                                                                       
Query: 245 gttctacccagaagacattatttgataacttttaaaaatgttactgctattaataatatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttctacccagaagacattatttgataacttttaaaaatgttactgctattaataatatt 504

                                                                       
Query: 305 ttattaatattttatattttaatctaaaaatgtctggaaatatttggtataagcgaaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttattaatattttatattttaatctaaaaatgtctggaaatatttggtataagcgaaaaa 564

                                                                       
Query: 365 actgatcacattagttcagtcatcacaaataatggactgcaacatttaaaatttcccaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actgatcacattagttcagtcatcacaaataatggactgcaacatttaaaatttcccaga 624

                                                                       
Query: 425 agtccctactactcagtgtaccatcagaagagaattccagatctcctggaattagaatta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtccctactactcagtgtaccatcagaagagaattccagatctcctggaattagaatta 684

                                                                       
Query: 485 tagatggttttaatgaagccaccacgtgggtgttagaaactgaacctgtgtcctctgcaa 544
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 tagatggttttaatgaagccaccatgtgggtgttagaaactgaacctgtgtcctctgcaa 744

                                                                       
Query: 545 aagcagcaagtgttcttaaatgctgaaccacccatctagcctaacccatctttaagacag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagcagcaagtgttcttaaatgctgaaccacccatctagcctaacccatctttaagacag 804

                                                                   
Query: 605 gatctctcacgtaatgtaaaagttacagattctgttggactggttggctagcagaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gatctctcacgtaatgtaaaagttacagattctgttggactggttggctagcagaa 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)