TTAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCTAGGCCTGCCTGGTCTACATAGGCAAGTTCCAGGGCAGCC
AGGCCTATATGAGACTTCAAAAAACCAAAAGAGGTTAAGAAAAGAACAGC
AAAGACCAGCAACACGGCTCGGTGGGTTAGGTACTTAATGCTAAGCCTAG
TGACCTGAGTTCAACCCCAAGGATACACTTGCAATGTGGAGCAGCAGAAC
TGATGCCCACAAATTGTGCCATGGAGCATGCAGTTCGCAAAATAAATACA
CATAAAATATTTATTTTTAAAGAAAATCAATCAATAAAATTAGCTTTAGA
TAATGTGAATGCCAGAGGACTGACAAGAAATTTAAAGCAGCTATGATAAT
ATTAAAGACAAAAAAAAATCAGTGGCTGAAAGATTTCTTAGCAGAGAAAT
GAATATTTGCAAGAACACACACATACATACATATGCACCCACCCCACCCC
ACCACCACCACCACCCCACCACCACCACCCCCTCCACCACCCCCCTACCA
CCACCACCCCACCACCACCACCACCACCAAGAATTCCAGGATGTAAACTA
GACTATCTGAAATGGAAAATTCACAAACTAAAAATAAGAGTAAACTAGGA
GAAGCTGAATAAAAGACCAGTGAACCAGACAGCATCGGAATTGGACAACA
GAGGTTGAAGGAAGAGTAAGCAGAGTGTCCACGACATGTCGGAGAGGATG
GGCAAAT

TATCCAATGCTATGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACGGTATGTATTTATTTCTTAT
AGTCCTCGGTTAGCGTCAAGGAAGATTTCATGCGTTGAATGTGAAGTGTG
CCCCACAGACTCACGGGTTTGAACAGTTGGTACTGTTTTGAGAGACTGCG
GAATCTTTGGGATGTGGGGCCTATCTGGAAGAAGTGAGTTGTGAGAGGTA
GAGCTTAAGATTTTATAGGCCGTCCTCACTTCCTGTTTTCACTCTGCTTC
GTGGTACGCAGCGATTTGAGCAAGGGGTCCACATACTCTGCAGCCCTAGC
CTTCAGCCAGTCCAGTCGATATGCCTCCTCTGCCAGACTATGAGCCCAAA
CAAACCTCTCCTCCTTAAGTGGCTTGTTGCCAGGTATTTAGTGAGCACAC
CAACAAAGTAATTAACACAGAGAGTGCTTTTCCCTCTCTTGAAGAGTGGC
TGATCTGGGCCTGCCCTGGGTAGCTTTGCTCTCTTTGTTCTCTCACCCAC
TGTATGGGAACCCCTAGGCTAGGTTGATGGAGGCCCGGCTTCTTGTGATG
GTGCGTGAGAATAAAATGAATTTAGAAGAGCCTTTTACAGTGTCACTTTG
GTCCCTTTCTTTTAGACAAAGCCAACCTAAGGGCTCAAACCAGCTTCTAA
AGGTGAAGACGACAGTGCAGCCACAGATTGAGAACAAAGGAG

Query= MSMg01no528_d18.g1 MSMg01no528_d18.g1 CHROMAT_FILE:
MSMg01no528_d18.g1 PHD_FILE: MSMg01no528_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:47 2005
         (562 letters)



>mm_chr1_129090660_129091621
          Length = 962

 Score = 1087 bits (562), Expect = 0.0
 Identities = 562/562 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacggtatgtatttatttcttatagtcctcggttagcgtcaaggaagatttcatgcgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacggtatgtatttatttcttatagtcctcggttagcgtcaaggaagatttcatgcgttg 260

                                                                       
Query: 61  aatgtgaagtgtgccccacagactcacgggtttgaacagttggtactgttttgagagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtgaagtgtgccccacagactcacgggtttgaacagttggtactgttttgagagact 320

                                                                       
Query: 121 gcggaatctttgggatgtggggcctatctggaagaagtgagttgtgagaggtagagctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcggaatctttgggatgtggggcctatctggaagaagtgagttgtgagaggtagagctta 380

                                                                       
Query: 181 agattttataggccgtcctcacttcctgttttcactctgcttcgtggtacgcagcgattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattttataggccgtcctcacttcctgttttcactctgcttcgtggtacgcagcgattt 440

                                                                       
Query: 241 gagcaaggggtccacatactctgcagccctagccttcagccagtccagtcgatatgcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcaaggggtccacatactctgcagccctagccttcagccagtccagtcgatatgcctc 500

                                                                       
Query: 301 ctctgccagactatgagcccaaacaaacctctcctccttaagtggcttgttgccaggtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgccagactatgagcccaaacaaacctctcctccttaagtggcttgttgccaggtat 560

                                                                       
Query: 361 ttagtgagcacaccaacaaagtaattaacacagagagtgcttttccctctcttgaagagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagtgagcacaccaacaaagtaattaacacagagagtgcttttccctctcttgaagagt 620

                                                                       
Query: 421 ggctgatctgggcctgccctgggtagctttgctctctttgttctctcacccactgtatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctgatctgggcctgccctgggtagctttgctctctttgttctctcacccactgtatgg 680

                                                                       
Query: 481 gaacccctaggctaggttgatggaggcccggcttcttgtgatggtgcgtgagaataaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaacccctaggctaggttgatggaggcccggcttcttgtgatggtgcgtgagaataaaat 740

                                 
Query: 541 gaatttagaagagccttttaca 562
           ||||||||||||||||||||||
Sbjct: 741 gaatttagaagagccttttaca 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)