Query= MSMg01no528_m13.b1 MSMg01no528_m13.b1 CHROMAT_FILE:
MSMg01no528_m13.b1 PHD_FILE: MSMg01no528_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:29 2005
(609 letters)
>mm_chr1_99748789_99749796
Length = 1008
Score = 1139 bits (589), Expect = 0.0
Identities = 601/605 (99%), Gaps = 1/605 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgtttcattcttttactttgattctccccaaaattgtgaagaagtgtgggtat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gaattcttgtttcattcttttactttgattctccccaaaattgtgaagaagtgtgggtat 749
Query: 65 atctgtctggaaacatacaaaagttcaatggctcctcttatgtgatgtcactagctagtg 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 748 atctgtctggaaacatacaaaagttcaatggctcctcttatgtgatatcactagctagtg 689
Query: 125 atatatattaactgaattcatgactcatgttctgcattgtgaatgcaccagttctcttgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atatatattaactgaattcatgactcatgttctgcattgtgaatgcaccagttctcttgt 629
Query: 185 aatgtttctttgatcatttctccccttacatctatctctacaatttcaagaatgacagtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatgtttctttgatcatttctccccttacatctatctctacaatttcaagaatgacagtg 569
Query: 245 agatgcttgccttacgttgccatatcattctaagtgtgatttttatgcagaccacatatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agatgcttgccttacgttgccatatcattctaagtgtgatttttatgcagaccacatatg 509
Query: 305 tcagttcaacagacaatgacaataaaaagcggaggataaaccttgtgcatgttgcatctt 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 508 tcagttcaacagacaatgacaataaaaagcggaggagaaaccttgtgcatgttgcatctt 449
Query: 365 atcctttacatctgaaaacagaattggccacttaatcgcttggtgatactgcctccaatg 424
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 448 atcctttacatctgaaaacagaattggccacttaatcgcttggcgatactgcctccaatg 389
Query: 425 tgtttctgagtatactcaatggttggatttttttaagggtgtccccaaaatgcagtacat 484
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 388 tgtttctgagtatactcaatggttggatttttt-aagggtgtccccaaaatgcagtacat 330
Query: 485 gttttgattctactaagagatgaatatccactgagtagttccttaatcgcaaatctacac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gttttgattctactaagagatgaatatccactgagtagttccttaatcgcaaatctacac 270
Query: 545 ttgaaagtaaaattttaaatgtattttctacaaatcttaatgcctattttcctttcacat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttgaaagtaaaattttaaatgtattttctacaaatcttaatgcctattttcctttcacat 210
Query: 605 gtaca 609
|||||
Sbjct: 209 gtaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space: 597802
Effective search space used: 597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_m13.g1 MSMg01no528_m13.g1 CHROMAT_FILE:
MSMg01no528_m13.g1 PHD_FILE: MSMg01no528_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:29 2005
(645 letters)
>mm_chr1_99585583_99586628
Length = 1046
Score = 1228 bits (635), Expect = 0.0
Identities = 644/647 (99%), Gaps = 2/647 (0%)
Strand = Plus / Plus
Query: 1 cagagaatccatttgcaagtaagtcacgtaaacttttactagataacagtggcatacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cagagaatccatttgcaagtaagtcacgtaaacttttactagataacagtggcatacaga 259
Query: 61 aaggtaagctcaactacagagaaccaaacacacgtggacagaggagttgttcatattttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaggtaagctcaactacagagaaccaaacacacgtggacagaggagttgttcatattttc 319
Query: 121 ctttgtcttgaagtcttaataatgctatggttggttcccctatgtagtttcacagaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctttgtcttgaagtcttaataatgctatggttggttcccctatgtagtttcacagaaaat 379
Query: 181 aagctttaaaaaaa-ttaaatatttcattactgtgtctgtttcccttgggtttccataac 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagctttaaaaaaaattaaatatttcattactgtgtctgtttcccttgggtttccataac 439
Query: 240 gaaataggagagtcgcttgtttaaacaacagcaattcattttctcgtgcttctgggaata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaaataggagagtcgcttgtttaaacaacagcaattcattttctcgtgcttctgggaata 499
Query: 300 gaaattccaagctcaaggttacttctgaggtttctgtcctaacttcaaaacgggttcagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaaattccaagctcaaggttacttctgaggtttctgtcctaacttcaaaacgggttcagt 559
Query: 360 ctagctatgttcacgtggggttgttccttaatttgcgtgtgattcctagtttaatctctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctagctatgttcacgtggggttgttccttaatttgcgtgtgattcctagtttaatctctt 619
Query: 420 ccacagaaactcgtcatgcaatgagggctcttctgtatacctgcattgcacataggttat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccacagaaactcgtcatgcaatgagggctcttctgtatacctgcattgcacataggttat 679
Query: 480 cttctctctagatacagttatattccaagatacggggagagggtcatgatgtcagcttgt 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 680 cttctctctagatacagttatattccaagatacggggagacggtcatgatgtcagcttgt 739
Query: 540 atataggagagatggagatgacttataacaactccatatccttaacctgaagtcacttga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atataggagagatggagatgacttataacaactccatatccttaacctgaagtcacttga 799
Query: 600 tagtgggctctgaagcctctaggactgggagggaataa-tttctgtt 645
|||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 800 tagtgggctctgaagcctctaggactgggagggaataaatttctgtt 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
