Query= MSMg01no528_o13.b1 MSMg01no528_o13.b1 CHROMAT_FILE:
MSMg01no528_o13.b1 PHD_FILE: MSMg01no528_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:39 2005
(703 letters)
>mm_chr1_136082890_136083992
Length = 1103
Score = 1185 bits (613), Expect = 0.0
Identities = 678/709 (95%), Gaps = 19/709 (2%)
Strand = Plus / Plus
Query: 2 gcggaattcacaaag----ttcctccagccaggcagagagaaactcctactcagcgcagc 57
||||||||||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct: 202 gcggaattcacaaaggaggt----ccagccaggcagagagaaactcctgctcagcgcagc 257
Query: 58 tttgtcagcaggaaaggtggccattgacactggctatgacatcgcccagatagcccagtg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttgtcagcaggaaaggtggccattgacactggctatgacatcgcccagatagcccagtg 317
Query: 118 agtccgctgccctcagaagcttgtcaggcaataccttttcccaccctgccctctcatccc 177
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agtcccctgccctcagaagcttgtcaggcaataccttttcccaccctgccctctcatccc 377
Query: 178 atgaagacttaggagttccaaaacattgatatatgcactttggcaactctcccctctctg 237
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 378 atgaagacttaggagttccaaaacattgatatatgcactttggcaactctc-------tg 430
Query: 238 tgacttagtttcccatctgttaagtgggccacaatgagactttacttcctttttcgcttg 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 431 tgacttagtttcccatctgttaagtgggccacaatgagactttacttccttttttgcttg 490
Query: 298 gaatgatattggtttggaaggggtagtagaaagaattatatggtgcatctgccactccaa 357
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gaatgatattggtttggaaggagtagtagaaagaattatatggtgcatctgccactccaa 550
Query: 358 ggtgctctccctatgctaagcagagtgctagacgtgggagaggcaacccacagtgagaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggtgctctccctatgctaagcagagtgctagacgtgggagaggcaacccacagtgagaaa 610
Query: 418 acatcatgcatcagaatgcagagggaagcagtcccctttcccatcacccagtacccttct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 acatcatgcatcagaatgcagagggaagcagtcccctttcccatcacccagtacccttct 670
Query: 478 ccttacacatgagtttgaactgccaacagctacacagcatctcttccaagggcacaggca 537
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 671 ccttccacatgagtttgaactgccaacagctacacagcatctgttccaagggcacaggca 730
Query: 538 agcccatgggaaacccaggagcaaagaccaaggatatgaaatctcctttagaatcttagg 597
|| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 731 aggc-atgggaaacccaggagcaaggaccaaggatatgaaatctcctttagaatcttagg 789
Query: 598 gctatactaagtctggtgctttaactgctgggtagaaaggaggtgttatatccatttatt 657
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ggtatattaagtctggtgctttaactgctgggtagaaaggaggtgttatatccatttatt 849
Query: 658 ctgaatctccaaagctcatactac---cttaagcctaacagccccttct 703
||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct: 850 ctgaatctccaaagctcatacaactgccttaagcctaacagccctttct 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no528_o13.g1 MSMg01no528_o13.g1 CHROMAT_FILE:
MSMg01no528_o13.g1 PHD_FILE: MSMg01no528_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:39 2005
(649 letters)
>mm_chr1_136250393_136251441
Length = 1049
Score = 1239 bits (641), Expect = 0.0
Identities = 647/649 (99%)
Strand = Plus / Minus
Query: 1 caaagtaagtgaaacttgctgttggggtttggctaatggattcttgtatggtgggcttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 caaagtaagtgaaacttgctgttggggtttggctaatggattcttgtatggtgggcttgt 790
Query: 61 tcttgagtcttgtttgtagcttcttaatgggaagggctgtaggtcccaaccattaggggg 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 789 tcttgagtcttgtttgtagcttcttaatggggagggctgtaggtcccaaccattaggggg 730
Query: 121 ctcatgtaaacttgtaggttcagaagtgtcatttctctgacacatccctgctgtgctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ctcatgtaaacttgtaggttcagaagtgtcatttctctgacacatccctgctgtgctgga 670
Query: 181 ctgctttgctatccttccttaaagctttcttatgcttatagtgtatttcttaagtctcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctgctttgctatccttccttaaagctttcttatgcttatagtgtatttcttaagtctcta 610
Query: 241 ttttaattctatgcactgtacatttgatcactgtagataaaatggttttgatagcttggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttttaattctatgcactgtacatttgatcactgtagataaaatggttttgatagcttggg 550
Query: 301 ctagaaaaaatacttgaatggtaggtgtatactacagttttcacaaaatgcttagtcatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctagaaaaaatacttgaatggtaggtgtatactacagttttcacaaaatgcttagtcatg 490
Query: 361 acacaaataacacaaggaattctactgattgtctgtttctaacgtaacctcggcatcttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 acacaaataacacaaggaattctactgattgtctgtttctaacgtaacctcggcatcttg 430
Query: 421 ctttaaggattcaagtatagacatctttacgcgctaagaccctgtgccaggctctgatca 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 429 ctttaaggattcaagtatagacatctttacgtgctaagaccctgtgccaggctctgatca 370
Query: 481 tttgtctcagagattataaggtgctatagtctattcatagatgttaggattccaaaatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttgtctcagagattataaggtgctatagtctattcatagatgttaggattccaaaatct 310
Query: 541 tcctatgttttaagctccctttatctttgtattctctacatagtttatatccctacactg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcctatgttttaagctccctttatctttgtattctctacatagtttatatccctacactg 250
Query: 601 tattcaagcttctggtattctgaataataagtaggtctattttaattat 649
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tattcaagcttctggtattctgaataataagtaggtctattttaattat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
