BAC Information

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BAC

Clone NameMSMg01-529F04
Chromosome1 (Build37)
Map Location 106,064,898 - 106,065,574
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529F04.T7 (MSMg01no529_f04.b1)MSMg01-529F04.TJ (MSMg01no529_f04.g1)
ACCAG598230AG598231
length7321,000
length of high quality
(start - end)		673 (56 - 728)---
definitionCHROMAT_FILE: MSMg01no529_f04.b1 PHD_FILE: MSMg01no529_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:14 2005CHROMAT_FILE: MSMg01no529_f04.g1 PHD_FILE: MSMg01no529_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCAACAAACCAAATAACACAATTTAAAAATGAGGCA
CATAACCAAACAAAGAATTATCAACAAAGAAATTTCTCTTGCCTAAGAAG
CAGTTAAAGAAATGCTCAATATCCTTAGTCAGTGGGGAAATTCAAGTCAA
AATGAATCTGAGATTCAATAATTATTTTATGTATTTACATTTGAAAAGCT
GCCCCCCTCTCAGAGTTCCTCACCTTCCCCTCCATTTACCTCTCAGAGGA
TGCCAAACCACTACCTTTCCCATCACAACCCACTAGATCAATTAAACAAA
CAAAAAAAGGAGATCAAGGGGATACAAACTAAGATTCCATCTTATACACA
TCAGAATGGGTAAGATCAAACAAACAAACAAACAAACAATAACAAGGGAT
GGAACATGCTGTCATCTATTTGAAGAAAAAGGAATAGTCCTCCATTGCTA
ATAGGATTATAAACTTCTACAACTACTTTAGAAATAACCAAATCACCCTG
ATGGTTTCTCAGAAATTTGGAAATAGTTCTACCTGAAGACACACCTATAC
TACTCCTGGGCATATACCCAAAAATGTTCCCCCAAATCCCAAGGACACAT
GTTCCACTGTGTTCATAGCAGCTATAGTCATAATAGTTAGAAACTGGAAA
CAACCCAATAAATTCCATTTACACAATAGAAT

NNAATAAACATGNNNNNNCNCNNNNNNCNNNNNNNNNNCNNCNNNNNNNN
NNNNNNNNNCCCNNCNNNNCCCGACAAAGACCCCNNNCNNNCNNNNNNNN
NNNNNCNCCACCCCCCCCCCCCNNNNNNNCNCNNNNNNNNNNNNNCCCCC
CCCCCNNNNNNNNNNNNCCCCCCCAAAATTNNACATAANNTGNNGGNTTA
AGGGNCCCCTTGGGNNNCGGGGNCCCCGNCCCCGTGGGTTTTTTTCTCCT
TCAGNNAAACNATTGTGCTTAAGGGCGTTGNAACCAAAGTGACATCGACG
GAAAGTTTATCTCCCGGTCGGGCGGAGATGTGCGTNCAACCCCTTGNAAA
GGGAAAAATAACTCGGAAAAATGTGGGNNNNNNNAAGGAAAAAAANAAAA
AAAACCNCNCAAATACCTTGTTTGAACAAGNAAACANNNNNAAAAAANNA
AAANAAAAAAANNAAANNNNNNNNNNNNNNTTNATGCCGATAAAAACTGG
GGGGGGGGGGGGGGGGGNCCTTTCTCTTTAAANNNNNNNNANNAAAAAAA
AAAAAAAAAAAAAAAAAATAAANANNNNNNNNNNNNCCAAAAAAAACAAA
CCCCCCCCCAAAAAATTTTCTCCCCTTTCTCCCCACCCCCCTCTAAAAAA
AAAAAGCGCGTAAAAAAAAAAACAAAAAAAATATTTTTTTGTAGAAAAAA
CAAAAAAAAATTTTTCTCTCCNNAAATTATTTTTGGTAAAAAAAAAAAAA
AAAAAACACCCCCCCCTCTTTTAGAAAAAAGAACAAAAAAAACAAATTTC
TCTGCTAAAAAAAAATAAAAAAAACACAAACCCCTCTCTCTCTTCTTTTA
AANNAAGAAAAAAAAGAAAAAAATATTTCTCCCCCCTTTTTTTTTTTATT
TATTATAAAACACACCCAACCCACCCCCCACACAAAAAAAAAAANNNNNN
NNNCCCACCCCCCAAAAACTTTATTATAAATAATTTATAAAAAGAGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_f04.b1 MSMg01no529_f04.b1 CHROMAT_FILE:
MSMg01no529_f04.b1 PHD_FILE: MSMg01no529_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:14 2005
         (673 letters)



>mm_chr1_106064694_106065766
          Length = 1073

 Score = 1266 bits (655), Expect = 0.0
 Identities = 668/677 (98%), Gaps = 8/677 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaacaaaccaaataacacaatttaaaaatgaggcacataaccaaacaaagaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaacaaaccaaataacacaatttaaaaatgaggcacataaccaaacaaagaatt 264

                                                                       
Query: 65  atcaacaaagaaatttctcttgcctaagaagcagttaaagaaatgctcaatatccttagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcaacaaagaaatttctcttgcctaagaagcagttaaagaaatgctcaatatccttagt 324

                                                                       
Query: 125 cagtggggaaattcaagtcaaaatgaatctgagattcaataattattttatgtatttaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagtggggaaattcaagtcaaaatgaatctgagattcaataattattttatgtatttaca 384

                                                                       
Query: 185 tttgaaaagctgcccccctctcagagttcctcaccttcccctccatttacctctcagagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgaaaagctgcccccctctcagagttcctcaccttcccctccatttacctctcagagg 444

                                                                       
Query: 245 atgccaaaccactacctttcccatcacaacccactagatcaattaaacaaacaaaaaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgccaaaccactacctttcccatcacaacccactagatcaattaaacaaacaaaaaaag 504

                                                                       
Query: 305 gagatcaaggggatacaaactaagattccatcttatacacatcagaatgggtaagatcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagatcaaggggatacaaactaagattccatcttatacacatcagaatgggtaagatcaa 564

                                                                       
Query: 365 acaaacaaacaaacaaacaa--------taacaagggatggaacatgctgtcatctattt 416
           ||||||||||||||||||||        ||||||||||||||||||||||||||||||||
Sbjct: 565 acaaacaaacaaacaaacaaacaaacaataacaagggatggaacatgctgtcatctattt 624

                                                                       
Query: 417 gaagaaaaaggaatagtcctccattgctaataggattataaacttctacaactactttag 476
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaagaaaaagaaatagtcctccattgctaataggattataaacttctacaactactttag 684

                                                                       
Query: 477 aaataaccaaatcaccctgatggtttctcagaaatttggaaatagttctacctgaagaca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaataaccaaatcaccctgatggtttctcagaaatttggaaatagttctacctgaagaca 744

                                                                       
Query: 537 cacctatactactcctgggcatatacccaaaaatgttcccccaaatcccaaggacacatg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacctatactactcctgggcatatacccaaaaatgttcccccaaatcccaaggacacatg 804

                                                                       
Query: 597 ttccactgtgttcatagcagctatagtcataatagttagaaactggaaacaacccaataa 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttccactgtgttcatagcagctatagtcataatagttagaaactggaaacaacccaataa 864

                            
Query: 657 attccatttacacaata 673
           |||||||||||||||||
Sbjct: 865 attccatttacacaata 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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