BAC Information

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BAC

Clone NameMSMg01-529H11
Chromosome1 (Build37)
Map Location 174,743,529 - 174,744,170
singlet/doubletsinglet
Overlap genenone
Upstream geneCd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875
Downstream geneApcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529H11.T7 (MSMg01no529_h11.b1)MSMg01-529H11.TJ (MSMg01no529_h11.g1)
ACCAG598340AG598341
length7621,296
length of high quality
(start - end)		646 (51 - 696)---
definitionCHROMAT_FILE: MSMg01no529_h11.b1 PHD_FILE: MSMg01no529_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:26 2005CHROMAT_FILE: MSMg01no529_h11.g1 PHD_FILE: MSMg01no529_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCTTTGTTCAGCAACATTCTTTAGTAATTAGAGTATGGT
TTATTCTTTCTGGTGGTCATGATGCAGCTTGTTTACTATTATTTATTTAC
TTATTTATTCAAGGATTGACAGCAATATAGCTTGTATTTAAGCTTTGGTG
AACTTTGGTTGAAACCGTTAACTGTTTTTTTTTTTCCTGTTGCTGCTTCT
AACATAACCGTCTTCATCTCAGTGTTGAGCACTCAAGTGTAAACCTTAGA
TGGTGAAACAAATAAAAACGATCCTTCTAACAAACCTATCTTCTTCAGAG
CAGGCACGGACCTCTCAGGGAGTGCACTCTTGATCCCACATAAGGAGGAG
CTGTTTGGACAATGTGGAGACTTCAGAAAAGCCTGTGTAGAAGCTGTTCC
AGCCACAGCAATGTGACAGCGTTTCAGGCAATTTTATTGTAGGACCTCTT
TCCCAGGAAAGAAGAACACCCTAATCCCTCAATAAACTCTCAACAATGTA
CAAGGTATAATCTATTTCTGTCTTTTCCAGGATCAAGGAATTCAAACATT
AACCAGCAGCACAAACCAAGACACTTCTCCATTCCTTCTTGCTTCCTCTC
CCCACCAAATTTCCTTCCTGATCCTGCTCTTTCCTAGGACTTTGGAGAGG
ACTGAGATTACTCAAAGTGCCACGAGACACCAGCCATTGATCTTACACAG
GCTGCAACCCAG

GGTACTCTATGATCGAGTTACGCCATATGACAGAGAGTGCGAAGACACTA
CTCTCTCTCTATATTTATACGAGCGCGGCGCACGACTAGCGGCCTGTCTC
TCACATTCATCGTGACTTGTCGCTGAGAGACGTGTACATGCCGTCTCTTC
ACCGTTATTCTGTGTAAGAGTAGGTTGGACCTCGCGGCATTGTATTATTA
TGTTACTCGCTTATTGCAGCATACGTGCCGTNCATGTAGTATTGTGCTAC
CGAACGGTATGATCATATGTTGTTGTACATAACTATATACGGATGCNTAC
AGATTCTACGACGCAGTCATCGCCGCGANTATCGGCTGATGTTCTACGTT
GTGCTACTCATATAGGTCATATTGCGACTACACGCATTGACCACCCAGCT
TGCTANCTCTTAGATACGCTATGTGCGATANACATGCACTCATCTTCATC
TCTCGTATATATCTTTCGATCTCTCATCGGTAATTATTAGTGTGGACAAC
ACTCCTACCNGAACGTACGTTTGATGTGTGCGATCAATGATGCTCCGTGA
GAGTGTTAGAGTGGTGGTGACGTCGTGTTCGACCAACGCTGTTACGTCCC
TCGTATTGTTATCGTGATATGCATATTATCACGCTGATAGATATTATGAT
GCGTGTGCTGCTGATGATGAGCGCGGTGAATGTATTACACCTTGATCTCG
CTTCTATCACGTATGTTATACTTATCGTAGNCGCGAACACACGTAGATCG
CGACATTATCTGCGATAATTAACACACTATGTTCACACTTCCGGACGTAT
GGAACATCGTTGTCCGAGCATCTATCTCCGCTGACGTGTCNACTCTCGGG
TACTATACATTTACAGTAAAACTAGTTGTGTCGTAACTAATCGCAAGATA
ACTATATGCTATTCGCCAAACGATTCGTGTGCGGCGTCGCGACTATGATT
GAGTCTCGAATCAATTGATAGTGGTATACATACTACATATATATTACTCA
GGACATCTCACCACAATATTAATACANCAATTAACGACGTGCACACCGCT
CACACTCTATCTTACATCTGCACCGTATTACGCGTATGAGACTACTCATA
TCATACTCACTACCCTCATCTTTTGTCTTTACTCTTCTTCGCTCACCTTA
CAACATTACTGTTATATATATAATTCATGGACTATCACACCGCACAACAA
TATTGTGGATGAGTTGTATNCGCACCAGCACTTAACTCAACATGCTATAT
CAGCGTCGAGTATGGTATTCATTACCACGGTACTATACTAGTCNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_h11.b1 MSMg01no529_h11.b1 CHROMAT_FILE:
MSMg01no529_h11.b1 PHD_FILE: MSMg01no529_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:26 2005
         (646 letters)



>mm_chr1_174743325_174744370
          Length = 1046

 Score = 1228 bits (635), Expect = 0.0
 Identities = 641/643 (99%), Gaps = 2/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctttg-ttcagcaacattctttagtaattagagtatggtttattctttctgg 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctttgctt-agcaacattctttagtaattagagtatggtttattctttctgg 263

                                                                       
Query: 64  tggtcatgatgcagcttgtttactattatttatttacttatttattcaaggattgacagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggtcatgatgcagcttgtttactattatttatttacttatttattcaaggattgacagc 323

                                                                       
Query: 124 aatatagcttgtatttaagctttggtgaactttggttgaaaccgttaactgttttttttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatatagcttgtatttaagctttggtgaactttggttgaaaccgttaactgttttttttt 383

                                                                       
Query: 184 ttcctgttgctgcttctaacataaccgtcttcatctcagtgttgagcactcaagtgtaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcctgttgctgcttctaacataaccgtcttcatctcagtgttgagcactcaagtgtaaa 443

                                                                       
Query: 244 ccttagatggtgaaacaaataaaaacgatccttctaacaaacctatcttcttcagagcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccttagatggtgaaacaaataaaaacgatccttctaacaaacctatcttcttcagagcag 503

                                                                       
Query: 304 gcacggacctctcagggagtgcactcttgatcccacataaggaggagctgtttggacaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcacggacctctcagggagtgcactcttgatcccacataaggaggagctgtttggacaat 563

                                                                       
Query: 364 gtggagacttcagaaaagcctgtgtagaagctgttccagccacagcaatgtgacagcgtt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtggagacttcagaaaagcctgtgtagaagctgttccagccacagcaatgtgacagcgtt 623

                                                                       
Query: 424 tcaggcaattttattgtaggacctctttcccaggaaagaagaacaccctaatccctcaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcaggcaattttattgtaggacctctttcccaggaaagaagaacaccctaatccctcaat 683

                                                                       
Query: 484 aaactctcaacaatgtacaaggtataatctatttctgtcttttccaggatcaaggaattc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaactctcaacaatgtacaaggtataatctatttctgtcttttccaggatcaaggaattc 743

                                                                       
Query: 544 aaacattaaccagcagcacaaaccaagacacttctccattccttcttgcttcctctcccc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaacattaaccagcagcacaaaccaagacacttctccattccttcttgcttcctctcccc 803

                                                      
Query: 604 accaaatttccttcctgatcctgctctttcctaggactttgga 646
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 accaaatttccttcctgatcctgctctttcctaggactttgga 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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