Query= MSMg01no529_i02.b1 MSMg01no529_i02.b1 CHROMAT_FILE:
MSMg01no529_i02.b1 PHD_FILE: MSMg01no529_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:30 2005
(661 letters)
>mm_chr1_42950601_42951665
Length = 1065
Score = 1081 bits (559), Expect = 0.0
Identities = 623/651 (95%), Gaps = 13/651 (1%)
Strand = Plus / Minus
Query: 15 cttgtgcgttgagaccccagggaagaacccttcacagaccactggaaaacacagatattt 74
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 cttgtgggttgagaccccagggaagaacccttcacagaccactggaaaacacagatattt 1006
Query: 75 acattacaattcataagagcggcaacatcagttataaagtagcaatgaattagttttatg 134
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 acattacaattcataagagcagcaacatcagttataaagtagcaatgaattagttttatg 946
Query: 135 gttggagtgcgtcaccacagtgtgaggaactggattagagggttgtggcattaggaaggt 194
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 945 gttggagtgcttcaccacaatgtgaggaactggattagagggttgtggcatta-gaaggt 887
Query: 195 tgagaaccactgcgaaccactgcattagggaagcaagatcaaacattttcagcacactgg 254
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 886 tgagaaccactgcgaaccact--------gaagcaagatcaaacattttcagcacactgg 835
Query: 255 tttctaaaaagcagttctcaatacttctgaaatcctcaacaggtaagctcttcctcacct 314
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 834 tttctaaaaagcagttctcaatacttctggaatcctcaacaggcaagctcttcctcacct 775
Query: 315 gtacctgtggacagacagcatgtccaagtgcacacagcgctacctgagctcgcgccccag 374
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 774 gtacctgtggacagacagcatgtccaagtgcacacggcactgcctgagctcgcgccccag 715
Query: 375 ggaaagaatcagtcaaccagcccctggacttgaggctgcagtggctggaggcatggctcc 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ggaaagaatcagtcaaccagcccctggacttgaggctgcagtggctggaggcatggctcc 655
Query: 435 aaatgcaggcagagatatggaaggtatgagaacactagcatggtcagaacacaccttctt 494
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 654 aaatgcaggcagagatatggaaggtatgagaacactagcatggtcagaacataccttctt 595
Query: 495 ctctttgaaagggtttaattttctagagttaccaaagc----aactactgtaacagtaag 550
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 594 ctctttgaaagggtttaattttctagagttaccaaagcaactaactactgtaacagtaag 535
Query: 551 accttcctcatagatgagtttcaagttcagactggtaaattaacaattttccaatggctt 610
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 534 accttcctcatagatgagtttcaagtttagactggtaaattaaccattttccaatggctt 475
Query: 611 tcccgcagttttcacttaaaatccttttctaatttctacttaatactgtgt 661
|||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 474 ccccgcagttttcacttaaaatctttttctaatttctacttattactgtgt 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1065
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1055
Effective search space: 686805
Effective search space used: 686805
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_i02.g1 MSMg01no529_i02.g1 CHROMAT_FILE:
MSMg01no529_i02.g1 PHD_FILE: MSMg01no529_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:30 2005
(570 letters)
>mm_chr1_42768130_42769099
Length = 970
Score = 1071 bits (554), Expect = 0.0
Identities = 566/570 (99%)
Strand = Plus / Plus
Query: 1 cacgtcaactcttacctgtggaggacactgtccttccctgttgcacttcttggccatccc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 cacgtcaactcttacctgtggaggacactgtccttccctgttgcacttcttggccaaccc 260
Query: 61 accatgagagacaccccactgtagagcaattaactctgacataataggagtggggaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatgagagacaccccactgtagagcaattaactctgacataataggagtggggaggag 320
Query: 121 gcccacggacttctcataagggaagaggccacccagtgctcagaaataatcaaaagcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccacggacttctcataagggaagaggccacccagtgctcagaaataatcaaaagcttt 380
Query: 181 aacgctgctgagcagaggggctgctaatcccaagcagctcaagtgtgggccacacagcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacgctgctgagcagaggggctgctaatcccaagcagctcaagtgtgggccacacagcct 440
Query: 241 agtcatctatgcccacagcagcctggcaggtatctcagaagtagatgcacgttgggactg 300
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 agccatctatgcccacagcagcctggcaggtatctcagaagtagatgcatgttgggactg 500
Query: 301 tgggcttccacccaggagctgaggatctgggtaggtgtcttgagcaagacagacttcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggcttccacccaggagctgaggatctgggtaggtgtcttgagcaagacagacttcatt 560
Query: 361 ctccttgccctggacacccagatgctctagaaagccaggactgtgagcagaggtgacata 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccttgccctggacacccagattctctagaaagccaggactgtgagcagaggtgacata 620
Query: 421 agaaataactggccccttccaactgcaccactgctcaccttgcctctttcctagaggcgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaataactggccccttccaactgcaccactgctcaccttgcctctttcctagaggcgg 680
Query: 481 aagagcctttctttgtaagttgctccgtttttcttactgtggacagcaatttaatttcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagagcctttctttgtaagttgctccgtttttcttactgtggacagcaatttaatttcct 740
Query: 541 cctttgccccaagccttgcacacacaactg 570
||||||||||||||||||||||||||||||
Sbjct: 741 cctttgccccaagccttgcacacacaactg 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
