Query= MSMg01no529_j24.b1 MSMg01no529_j24.b1 CHROMAT_FILE:
MSMg01no529_j24.b1 PHD_FILE: MSMg01no529_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:40 2005
(635 letters)
>mm_chr1_184357058_184358091
Length = 1034
Score = 1131 bits (585), Expect = 0.0
Identities = 617/628 (98%), Gaps = 1/628 (0%)
Strand = Plus / Plus
Query: 5 gaattctctggttatctgtgctgggtgttctggcccagcagcaacagagtcgcattctct 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggttaagtgtgctgggtgttctggcccagcagcaacagagtcgcattctct 264
Query: 65 aggcttggttaatctttatttttttccagtattgtcaaggcactatgtgtaaggagctta 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcttggttaatctttatttttt-ccagtattgtcaaggcactatgtgtaaggagctta 323
Query: 125 tatgcagccttgttggctaagttgaggctttaggatccacatttcatgtggtacagttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatgcagccttgttggctaagttgaggctttaggatccacatttcatgtggtacagttat 383
Query: 185 cagaatgcacaaagcccgaggtgcattctgttcacactaggaatcttgacagcattttag 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 cagaatgcacaaagcccgaggtgcattctgttcatactaggaatcttgacagcattttag 443
Query: 245 cttcttctatatgattgacttactgttttaacagaatccactttaatgtttctggatgac 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 cttcttctatatgattgacttactgttttaacagaatccacgttaatgtttctggatgac 503
Query: 305 tttgtatgtgataggtgttttatatgcgttaggggacacctttgcaaaaaagggaggtga 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 504 tttgtatgtgataggtgttttatatgcattaggggacacctttgcaaaaaagggaggtga 563
Query: 365 agggtcccaaggaaacgggctaagtccaggtgcctccaaatcttctggtccccagtgtga 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agggtcccaaggaaatgggctaagtccaggtgcctccaaatcttctggtccccagtgtga 623
Query: 425 tgtccttctcagtgctgctttcacagtgaggctacgcagctttctcactgggagggtggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtccttctcagtgctgctttcacagtgaggctacgcagctttctcactgggagggtggc 683
Query: 485 cagaggagtttcagcctgcaagagaggtcaagtgacttttggcaaaccctctagctctgt 544
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagaggagtttcagcctgcaagggaggtcaagtgacttttggcaaaccctctagctctgt 743
Query: 545 aatgctactgtggcactgcaaccagagtgtggattcaacacattctgctgtgantgtgtg 604
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 744 aatgctactgtggcactgtaaccagagtgtggattcaacacattctgctgtgagtgtgtg 803
Query: 605 aatgtgtgtgtgtgtgtgtgtgtgtgtg 632
| ||||||||||||||||||||||||||
Sbjct: 804 agtgtgtgtgtgtgtgtgtgtgtgtgtg 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1034
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1024
Effective search space: 640000
Effective search space used: 640000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_j24.g1 MSMg01no529_j24.g1 CHROMAT_FILE:
MSMg01no529_j24.g1 PHD_FILE: MSMg01no529_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:40 2005
(492 letters)
>mm_chr1_184493575_184494467
Length = 893
Score = 803 bits (415), Expect = 0.0
Identities = 445/457 (97%), Gaps = 5/457 (1%)
Strand = Plus / Minus
Query: 41 gcattaatcgccaccgtcttgaagagtgttctggg----ggctgtaagatgcctcagtgg 96
||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 893 gcattaatcgccaccatctcaaagagtgttctgggggctggctgtaagatgcctcagtgg 834
Query: 97 atacgagggcttgccgcacaagcaggacaatctacattcagaggtagagaccagagaata 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 atacgagggcttgccgcacaagcaggacaatctacattcagaggtagagaccagagaata 774
Query: 157 aggagtctgaggtcactgtgggctaaatggtgagttcaaatccaacctgggttacgtgag 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aggagtctgaggtcactgtgggctaaatggtgagttcaaatccaacctgggttacgtgag 714
Query: 217 accctgtctctaaaatgaaataaaacagaatataaaataatcatgattcagcagttctga 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 accctgtctctaaaatgaaataaaacagaatataaaataatcatgattcagcagttctga 654
Query: 277 gctaagtctctaggacccatatcagagtctttagaccattcacctgcagatgattctaaa 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gctaagtctctaggacccatatcagagtctttagaccattcacctgcagatgattctaaa 594
Query: 337 gcgggttcacactggtctctgaaccagacagcctctgaggctgccagtcttcccactgag 396
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 593 gcgggttcacactggtctctgaaccagacagcctctgaggctgccggtcttcccgctgag 534
Query: 397 ggtcatccacgtgttcagccctgagcttggtgcttctgagagagcttgtttacctcccag 456
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 533 ggtcatccacgtgttcagccctgagcttggtgcttctgagagagcatgtttacctgccag 474
Query: 457 aca-gaaacagacaaaagcagggtttcccgtgattca 492
||| |||||||||||||||||||||||||||||||||
Sbjct: 473 acatgaaacagacaaaagcagggtttcccgtgattca 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
