BAC Information

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BAC

Clone NameMSMg01-529K23
Chromosome1 (Build37)
Map Location 48,336,291 - 48,336,401
singlet/doubletsinglet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529K23.T7 (MSMg01no529_k23.b1)MSMg01-529K23.TJ (MSMg01no529_k23.g1)
ACCAG598507AG598508
length786784
length of high quality
(start - end)
---109 (187 - 295)
definitionCHROMAT_FILE: MSMg01no529_k23.b1 PHD_FILE: MSMg01no529_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:45 2005CHROMAT_FILE: MSMg01no529_k23.g1 PHD_FILE: MSMg01no529_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTCCACTTTTTGCCGCTACCCTATCCTCTATATTCTCAGATCCGCGG
AATTCCTGATCTTTCCCGACTGTATCATGAATGGGCGTCGGATCTTGTTG
AATGTTTCTCCTCATCTAACGAGATGAGCATGTGGCTTTTGTCTTTGAGT
TTGTTTATCTACTGGTATACTCCGATGGATTTCTCCATATTAACCCATCC
CTGTATTCTTGGAATATAACCCACTTGGACACGATGGATCATTGCTCTTA
CTGCGTTCTTGGATTCCGTTATTGAGAACTCTATTGATGAGTCCCGCCCC
TATACCCATAACCGACATTGGTCTGAATCTCTCTATCTACGTTGGATCTT
TCTGTGCGTTTTTTTATCACTATTAATTGTATCCCCATCACAACGACATG
CTCATTATTCCTTCTATTTCTATTTCTGAGCAATCACTTTATCGTTACCT
GCGCATTTTCATCTCTTTGTAACGCCTGGCTAGATCCAGCTTTTTTTTCC
ATGTCCCCCTGGGCATTTTTTTGCCCTCATGATACTACTTGACACCTTCC
TCTATTTTCTCACCCGTCACACAGTTACCGCCTTATATTATCTTTCTCGA
CCCCGCTCTCACTCGGCATACCGGCAATTACGTCTTCTTACCTCGCCGCC
TTTTCACTCCCCGCTTTCTTCGTTTCGTTCACATATTTTTCTCTTTGCAC
CTACTCACCTTTTTCGGTGATTCTGTGTTTTTTTTTTGGTCCCCCCCTGT
TCCCCGCTGCTCTTTCCACTCTCTCCTAATCTTGTT
TTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGACATCTTTATTCACTTCATT
TTTTTCCCCAGATAAATAGTTACATATAAGTAGTGTAATTTGGGTAATTT
TGAACTTTGGAAGTAATCTAGACACTGGAAATAACTGGAAAATATTAGCT
CCTCAAAATTTGACTAAACTTACTGCAAAAAAAAGGTTTAGTGATATCTT
CTTACATTTGTACCTTCTCAAACAAGTTTCTCATGTCTGTCAAAATGAGG
TATACACAGAAATAATGAGCATTAACAATGAGCATTGCATAGCAGCATAG
AAGAATCTTTGTATGATGGGGAGGGTCTCTTCTTCCTTGGCAATGTGTTT
CAATGCTCATGATAAATATCCAAATATTATAAAATTACTACCAAATATCT
AAAGAAAAATTCCAGGCATATTTATCGTTCATCTGGATTTCCTTCTTTAA
ATCCTCTCTGGAGGAAAAGATGTACCCTCTATTTACCACCTGTATGTGCC
TTTAAAAAACTTGTGTTTTTTTCCCCTTATTTTTAATAACACAATTTTTT
TTCCTAGCTCCTTACTTAATTTACATTTTATCATCCACTTGTGCCCGCTA
CCTTATTATACACCACTTTTCTCTGTTTCCTCCCATTATATCCCCATTTT
GTATATAGGTTTATTTATTATGATATTATACATAACTTGCATATGGTCTT
GATCTTTTCATTTTTTCGCCACGTCTCCAATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_k23.g1 MSMg01no529_k23.g1 CHROMAT_FILE:
MSMg01no529_k23.g1 PHD_FILE: MSMg01no529_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:45 2005
         (109 letters)



>mm_chr1_48336091_48336601
          Length = 511

 Score =  195 bits (101), Expect = 5e-55
 Identities = 108/111 (97%), Gaps = 2/111 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaaatattagctcctcaaaatttgactaaacttactgc--aaaaaaaaggtttagtga 58
           ||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 311 ggaaaatattatctcctcaaaatttgactaaacttactgcaaaaaaaaaaggtttagtga 252

                                                              
Query: 59  tatcttcttacatttgtaccttctcaaacaagtttctcatgtctgtcaaaa 109
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tatcttcttacatttgtaccttctcaaacaagtttctcatgtctgtcaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 511
Length adjustment: 8
Effective length of query: 101
Effective length of database: 503
Effective search space:    50803
Effective search space used:    50803
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)