BAC Information

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BAC

Clone NameMSMg01-529L02
Chromosome1 (Build37)
Map Location 157,590,786 - 157,591,439
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4
Downstream geneQscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529L02.T7 (MSMg01no529_l02.b1)MSMg01-529L02.TJ (MSMg01no529_l02.g1)
ACCAG598513AG598514
length7351,730
length of high quality
(start - end)
658 (55 - 712)---
definitionCHROMAT_FILE: MSMg01no529_l02.b1 PHD_FILE: MSMg01no529_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:46 2005CHROMAT_FILE: MSMg01no529_l02.g1 PHD_FILE: MSMg01no529_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTCCCCATTAGTATAAAACAGACAAACTATTGTCA
AAATGCCCTTAGAAGACATTTATATTCTCACTATGAATTGTCCTGTTTTC
TTCACACCCAAATGAACAATGGGTATTATCCCTGCTTTTCTAATTAGCTA
ATAATTTTTATTGGTTGTCACAGCATTACTATGTTGCTAGACCTTATAAT
CCGAGTCAGTGATTATTTAAGATAATACCTAGCAAATCTAATATGCTTCT
TCAAACCACTTTCTTTTGTTGGGTATTTAGGTAAAACTTCCCTCCAGATT
ATAGTGCTGTAATAAAGATCTTCATGCATGAATCTTTAAAAAATATTCTA
GGTTACTTTTGTGTGTATTGAACACTCAAAATGGAATTACATGAACTAAA
ATATAGGAAAATTTTATGGTTTGGATAAATTTCCTCAAATATCTTCCCAA
ATGGATATTAAGAGTTTATAAAGACAACAGCAATGCCTGAGAGAGAACCA
TTTATAAACATCCTTACCAACTGAAATCCTATTTCCTCCCAGGTTGTAGG
AACAAACCAATAAACAAACGGTTGGGGCTACACTGGTTTGTTTGGTTGGT
TTTTTTCTTGTGTGTTTGGTTGCTAATGAAATTAGCATTTCCACCGTATT
TTCTCAATTTGTGTAGACAGCTCAGTAAACAGCAA
GGAGCGTGAGTATATGAGGTATTCATATAGCGACGAACATTATATACGCT
GGTGCTGCGCCNGCGACGCCTAGGTTGTTATTCTCCTCATTATAACACTG
TGCGGCGGGTGTGGTAGATCGACATAGNTCGAGTATGGCTGTTCTTCTGC
CGCGAGCGCGGCCGATGGACGCAGTGTACGTATATATACTATCTCATAAT
CTGTGCTGTGAGCGTAAGCACCTAGTAGCTNATATATACATAGTGGCAGA
GTGGACGGCCAGTGTACTATCANCGACTGACNTNTATATCATACGCCTTA
GCACGCGCTAGAACGGCTGGCGTTCATCGCGGGCGGAGCGATTGTATCGC
ACTCGCGGATATTATTTATAATCTATCGTAGCTCACAACTCTCGTCTATT
TCTACTACACTGTCTCAACGTGGTTAGTGGTAGGACGAGCATATGTATAC
ATGATATTACGATGCGGCCGTTAATAGCACGCGCGCGCACGCACGTTATT
ATTGTATATGTAGTAGGAAGAAGTGCATGCACTGGTCGTCTGTCGGGAGA
CGTGATCGGNTCTCATANATACGCGTTATTCTCGCGCCGCGCGGTCCGTG
CGCGGACGTATCGTATAGTTCACGTCTTGTCGTTGCATTCTATCGGTCGG
CGCGGGTAGTTTCTATTGGTGCGGCGATTCGTAGAGCAGCAATNGTTACG
CTCTTACGCACACACGACATCTGTGCTCAGTCGGTCGTACACTATGATTT
ACACTGTCTGTTACANATGATATATCTCGGTGGTGCGAGAGTAGGATTGA
AGTCTATGCGCGACGCGGACGCCGTGCCAGCTCAATATACGTAGATTAGC
AATCAGACGACAGATACTTAGGGCGCGAATNTGTGACTTTCTGTCTTGTT
TGTTGCACTCTAGCGTGTACGAACTACGTGCCGACAGAAGATTCTATGAC
GTGAGCGTTATGCCCTATACAGTGTCTGGCGCTAGACCGCGTCGAGACGC
GCGACAACTNTTATGTGTATCAGATACGTATGCGGATAGTATGTTTATAG
AGGGCGCACGGCGCGNCGAGAACGAAAGTCTCGAGTCAAGTATAGCTATG
AGACGTGCGCAAGATGCGATAATATATGTCGTGATACGGTGGAAAGAGTG
TAGTTCTGTATACGTATAGTACGTCACTACGGACGACTATATGAAGAGTA
AGATCGATAGAGAGTGCATCAGAGATGCCCGTAGCAGATAANTATACATA
CCAGCAGACGTAATCGGAGCAGTTGTTCGTCACTGTCTGCTCGTTTTTAT
TCACGACATGGCGCGATGATTGCAGTCGACGTGTGACTTATCGCAGTATA
TGANTTACGACATGNATGTAATCACGCTCCACTGATAGTATATTGTGTAT
AGAGAGCGTAATCTCACGAGACGTCANTGAGAAGAGCTAAGCGGTGATAT
GATCGCGTCGTCGCGACGTGACACACGAGTGANCAAAACNGACGAAAGAC
AGAGAGATATGATAATGAATCGCTCCTTCAGCGTTCGTGTGATAGAGANA
TATAGACCGCTGTAGATGACAGTTGCGTTTCGCTCTTNTCTGTATACATA
CTAATGTATACGAGTACCTCGCAGGNTGATATGATATTGCCGTCTAGANA
GACGGCGAGCGCGAGAGANCGCTCTAGATAGATGTTATGCTCTGTCACTC
TCACTCTACATGTTTNTGTACGCCTCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_l02.b1 MSMg01no529_l02.b1 CHROMAT_FILE:
MSMg01no529_l02.b1 PHD_FILE: MSMg01no529_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:46 2005
         (658 letters)



>mm_chr1_157590582_157591639
          Length = 1058

 Score = 1257 bits (650), Expect = 0.0
 Identities = 653/654 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttccccattagtataaaacagacaaactattgtcaaaatgcccttagaagaca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattctttccccagtagtataaaacagacaaactattgtcaaaatgcccttagaagaca 799

                                                                       
Query: 65  tttatattctcactatgaattgtcctgttttcttcacacccaaatgaacaatgggtatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tttatattctcactatgaattgtcctgttttcttcacacccaaatgaacaatgggtatta 739

                                                                       
Query: 125 tccctgcttttctaattagctaataatttttattggttgtcacagcattactatgttgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tccctgcttttctaattagctaataatttttattggttgtcacagcattactatgttgct 679

                                                                       
Query: 185 agaccttataatccgagtcagtgattatttaagataatacctagcaaatctaatatgctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaccttataatccgagtcagtgattatttaagataatacctagcaaatctaatatgctt 619

                                                                       
Query: 245 cttcaaaccactttcttttgttgggtatttaggtaaaacttccctccagattatagtgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cttcaaaccactttcttttgttgggtatttaggtaaaacttccctccagattatagtgct 559

                                                                       
Query: 305 gtaataaagatcttcatgcatgaatctttaaaaaatattctaggttacttttgtgtgtat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtaataaagatcttcatgcatgaatctttaaaaaatattctaggttacttttgtgtgtat 499

                                                                       
Query: 365 tgaacactcaaaatggaattacatgaactaaaatataggaaaattttatggtttggataa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgaacactcaaaatggaattacatgaactaaaatataggaaaattttatggtttggataa 439

                                                                       
Query: 425 atttcctcaaatatcttcccaaatggatattaagagtttataaagacaacagcaatgcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atttcctcaaatatcttcccaaatggatattaagagtttataaagacaacagcaatgcct 379

                                                                       
Query: 485 gagagagaaccatttataaacatccttaccaactgaaatcctatttcctcccaggttgta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagagagaaccatttataaacatccttaccaactgaaatcctatttcctcccaggttgta 319

                                                                       
Query: 545 ggaacaaaccaataaacaaacggttggggctacactggtttgtttggttggtttttttct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggaacaaaccaataaacaaacggttggggctacactggtttgtttggttggtttttttct 259

                                                                 
Query: 605 tgtgtgtttggttgctaatgaaattagcatttccaccgtattttctcaatttgt 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgtgtgtttggttgctaatgaaattagcatttccaccgtattttctcaatttgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)