ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAATCCGCG
GAATTCTCTAAAAGTGTTCCACACGTTCAATTATTTTATGTAAATGAGAA
AGACTGAAATCAAGGAAACCTCTTGGTTGAAGAAGTTTCTAGACTTTCTT
GGGTTCAGACCTTGTGGATCTCCACTTTCTGGACCTTGTTCTAGGTAAGC
CCTACACACAGCAACAGCATGGTGAGGAGTAGTATCACCTAGGGCCATTG
GGAGTGCTAGAATTTGGCATACACTAAGTTTGTTCCTGACCTCTGGAAAC
TTACAGGGAGGCAAAACTTAGGCTCACACTTCATTTCTTGAGAGAAATTG
GAGAAATGTTGTCAAGTGTACTCAGTAAGCAGGTGGCCCTTGCTTCAGGG
TCCTCAGCAATAGTAGTGTCACAGTATCCCTGCAGGCATTAAAGTGTACC
CCATACTTTGGGGCTGTCTGGGCACTTCTGGACATTTATCTGATGGGAGT
TGTGCAGAGCCTAGAGACAGTGGGTGAGCTAGGCTGCCCCTTCAGTTCAC
CCCTGTCTTGCCAGAGAGAACACGGTTAGCCATATTCTTAAAAAGACCCA
GGTTCTGGTGTGTGTGTTCCTTGGCCGGTTCTGCCAGCAACTGACCAGTG
CAGATGTGGATGCTTGGAGCCAACCATCAGACTGAGCTCGGGGACTCTGA
TGGGGTAGCTGGAGGAAGGACTGGACGAGCAGAGGGGGATTGCAACCCCA
AAGGAAGAACAAG

TTGTAACTCGGNGGGGGTCNNNGCTTGCCTATGCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATATATGGGAATTCCTTTANNNAAATTACATAAACAACCGTAAT
AAAGAGCATTCTGGTAACTTCGCATTGGGTGAGGGTTTCTGGCTGCAACC
TTGGAAAGGGGAACCGGCCTGGCACCAAGCTTTTTTCTGGATCTTCTTTC
GGGGGTCCCAAAACCTCCCCCTTTTCCTTTTTTCCCCTCAAAAAATAGAA
GAAACTTTTTAAAATTTTTCTCCCTTGGGAGAAAAACCCCCCCCCCCCCC
CGGGGGGTGTTTTGGTGGGGGGAAAAAAGAAAAAAACAAAANNTACGGNA
GTAGNCTAAGGGNAANNNCAGCGGNCTTGGGATAAAGAAGGGAAANNAAG
ANTANTAGATNTAAGNTTAGATTTTTAGGNNAAGGTNNAGAGANTAAGGN
AAAAAGNNNAGATTTAAAAAAAGNAGAGANTAGGCAAGTTAGAAANNAAG
NNAAATATGGAAGGTTAAAGGAGGAAGGGAGAGANAGTAGANNNNTCGTG
AGNNNAAGAAGAGNNTAGAAGNTAAGANTTGTGTGNNNCCGNTAGGTNNT
CGGNCCGCAGTGCGNNAGTATAG

Query= MSMg01no530_a08.b1 MSMg01no530_a08.b1 CHROMAT_FILE:
MSMg01no530_a08.b1 PHD_FILE: MSMg01no530_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:12 2005
         (683 letters)



>mm_chr1_38783839_38784922
          Length = 1084

 Score = 1181 bits (611), Expect = 0.0
 Identities = 667/687 (97%), Gaps = 8/687 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattctctaaaagtgttc-cacacgttcaattattttatgtaaatgagaaagactgaa 61
           |||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ggaattctctaaaagtg-acacacacgttcaattattttatgtaaatgagaaagactgaa 700

                                                                       
Query: 62  atcaaggaaacctcttggttgaagaagtttctagactttcttgggttcagaccttgtgga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 699 atcaaggaaacctcttggttgaagaagtttctagactttcttgggttcagaccttctgga 640

                                                                       
Query: 122 tctccactttctggaccttgttctaggtaagccctacacacagcaacagcat-ggtgagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 639 tctccactttctggaccttgttctaggtaagccctacacacagcaacagcatcggtgagg 580

                                                                       
Query: 181 agtagtatcacctagggccattgggagtgctagaatttggcatacactaagtttgttcct 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggtagtatcacctagggccattgggagtgctagaatttggcatacactaagtttgttcct 520

                                                                       
Query: 241 gacctctggaaacttacagggaggcaaaacttaggctcacacttcatttcttgagagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gacctctggaaacttacagggaggcaaaacttaggctcacacttcatttcttgagagaaa 460

                                                                       
Query: 301 ttggagaaatgttgtcaagtgtactcagtaagcaggtggcccttgcttcagggtcctcag 360
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 459 ttggagaaatgttgtcaagtgcactcagtaagcaggtggcccttgctttagggtcctcag 400

                                                                       
Query: 361 caatagtagtgtcacagtatccctgcaggcattaaagtgtaccccatactttggggctgt 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caatagtagtgtcgcagtatccctgcaggcattaaagtgtaccccatactttggggctgt 340

                                                                       
Query: 421 ctgggcacttctggacatttatctgatgggagttgtgcagagcctagagacagtgggtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctgggcacttctggacatttatctgatgggagttgtgcagagcctagagacagtgggtga 280

                                                                       
Query: 481 gctaggctgccccttcagttcacccctgtcttgccagagagaacacggttagccatattc 540
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||  ||||
Sbjct: 279 gctaggctgccccttcagttcacccctgtcttgccagatagaacactgttagccgcattc 220

                                                                       
Query: 541 ttaaaaagacccaggttctggtgtgtgtgttccttggccggttctgccagca---actga 597
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||
Sbjct: 219 ttaaaaagacccaggttctggtgtgtgtgttccttggtcggttctgccagcagcaactga 160

                                                                       
Query: 598 ccagtgcagatgtggatgcttggagccaaccatcagactgagctcggggactct-gatgg 656
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 159 ccaatgcagatgtggatgcttggagccaaccatcagactgagctcggggac-cttgatgg 101

                                      
Query: 657 ggtagctggaggaaggactggacgagc 683
           |||||||||||||||||||||||||||
Sbjct: 100 ggtagctggaggaaggactggacgagc 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1084
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1074
Effective search space:   722802
Effective search space used:   722802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)