BAC Information

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BAC

Clone NameMSMg01-530F09
Chromosome1 (Build37)
Map Location 157,620,934 - 157,799,686
singlet/doubletdoublet
Overlap geneQscn6, Cep350
Upstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4
Downstream geneLOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530F09.T7 (MSMg01no530_f09.b1)MSMg01-530F09.TJ (MSMg01no530_f09.g1)
ACCAG598998AG598999
length743765
length of high quality
(start - end)		692 (52 - 743)589 (82 - 670)
definitionCHROMAT_FILE: MSMg01no530_f09.b1 PHD_FILE: MSMg01no530_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:37 2005CHROMAT_FILE: MSMg01no530_f09.g1 PHD_FILE: MSMg01no530_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,620,934 - 157,621,622)(157,799,140 - 157,799,686)
sequence
NTTTTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCGCGGAATTCACCTGTATCCACAGTGTCGACTGGAATTCTTGTCTTCTT
GGCCTGTGGTGCCAGTTGGTGACACTGTCTTATAAAGTCTCACAGTTGGC
ACCTCTCATTCCTACCTCTGTCTGCATTCACCTCAGAGGATTTCACATTT
GGGATGCTTGGGGTTCCTCATCTGCAGTAGTTTCTTTGTGGTTTTTTTCT
GGAATGTGGATCCTTCTGAATGAGGATTGTCTGACTCTGAGCTTAGTTGC
CTATTCAGAGCCAAGGGTGTGCCATCCTGGCAGTGTGGCGAGATGAACAG
GTTAATGCAAGTTAAAATCATTAGAATTTATTGGCTAACACACGAAAAAC
ATAAATTTAAATTGGGAAAATAACACAATATTACCACTGGTATTCATCTT
GAATTTGTGTGCATTCCTATCAGCCATGAGATTTTTTTAAGTTAATTTCT
GTACACTCACACACACGCCCCTGCCATAGCATACACATGGCTCTAGGGGA
CATCTTTTGTGAATTGGTTTGTACCTTCCATCTTGCTGGGGTGGCACCAG
CCACTCTTGTCCTTCCTGACTATACAGGGGACTCCTGGCTAGCTGGCCCA
CAAGCTTCTGGAATATTCTCCAGTCCCCATTTGTCATCTTGTTGTAGGAA
TGCTAGTGAGACAACAGGCACAGCATTTTAAAAACTGTATTGT

NNTTTTCCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGACTTGCTTAACAGTA
ATGTCTGTAGTGGTGTGTGCTTGTAATCCCATCTACTCTGGAGGATGAGG
GAGGGAGAATGTCTAGGGTAAGGCCAGCCCAAACTGCTGAGTTCCAGCTA
GCCTGACTGCACAGCACGTCCCTGTCTCAAAATAGAAAGTTTTAAAAAGG
GACAGGGATGTAGCTCAGTAGTAGATAGCTTGTCTAACATACTCAAGTCA
ATGGGTTTAATTCTCAATATTAGAAAAACCCCACTTTCAAGACAAATTAA
TCAGTTCCCATTTAACATAGGACTGCATAGTATTTTGGCATTGACATGGA
TCCTGTTTTAATTTTTGACAGATTGGGGGGGGGGAGAAAAGAGATCCAAA
ACCTAAAATACTCCAAAATCTGAAATATGTTAAGAGCTGATAGAACACTG
TAAGTGGAAAGTTCTATATCTGATCTCGTGTGGCAAGTCATAGTCAAAAT
GCAGGTACATAATATTATTTAATCAGACGCCCATGGGATCCAGGCCCAGC
CATTCCCCATCATCCTGGATATATCTTTGCCATGCATGTCCAGACTCCCC
AACTCCGTTCTGCTCACAGGGATGATAAAACAGTGTATTTGTAGATCACA
CACAGCAGCGGAATTTTTCCATCATGCCTCACAAAGGGTTTTGGGAGCAT
TTCTTATCTTTTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_f09.b1 MSMg01no530_f09.b1 CHROMAT_FILE:
MSMg01no530_f09.b1 PHD_FILE: MSMg01no530_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:37 2005
         (692 letters)



>mm_chr1_157620730_157621822
          Length = 1093

 Score = 1286 bits (665), Expect = 0.0
 Identities = 683/689 (99%), Gaps = 1/689 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctgt-atccacagtgtcgactggaattcttgtcttcttggcctgtggtgcca 63
           |||||||||||| |  ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctgtaaggcacggtgtcgactggaattcttgtcttcttggcctgtggtgcca 264

                                                                       
Query: 64  gttggtgacactgtcttataaagtctcacagttggcacctctcattcctacctctgtctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttggtgacactgtcttataaagtctcacagttggcacctctcattcctacctctgtctg 324

                                                                       
Query: 124 cattcacctcagaggatttcacatttgggatgcttggggttcctcatctgcagtagtttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattcacctcagaggatttcacatttgggatgcttggggttcctcatctgcagtagtttc 384

                                                                       
Query: 184 tttgtggtttttttctggaatgtggatccttctgaatgaggattgtctgactctgagctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgtggtttttttctggaatgtggatccttctgaatgaggattgtctgactctgagctt 444

                                                                       
Query: 244 agttgcctattcagagccaagggtgtgccatcctggcagtgtggcgagatgaacaggtta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttgcctattcagagccaagggtgtgccatcctggcagtgtggcgagatgaacaggtta 504

                                                                       
Query: 304 atgcaagttaaaatcattagaatttattggctaacacacgaaaaacataaatttaaattg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgcaagttaaaatcattagaatttattggctaacacacgaaaaacataaatttaaattg 564

                                                                       
Query: 364 ggaaaataacacaatattaccactggtattcatcttgaatttgtgtgcattcctatcagc 423
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaaaataacacaatattactactggtattcatcttgaatttgtgtgcattcctatcagc 624

                                                                       
Query: 424 catgagatttttttaagttaatttctgtacactcacacacacgcccctgccatagcatac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catgagatttttttaagttaatttctgtacactcacacacacgcccctgccatagcatac 684

                                                                       
Query: 484 acatggctctaggggacatcttttgtgaattggtttgtaccttccatcttgctggggtgg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acatggctctaggggacatcttttgtgaattggtttgtaccttccatcttgctggggtgg 744

                                                                       
Query: 544 caccagccactcttgtccttcctgactatacaggggactcctggctagctggcccacaag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caccagccactcttgtccttcctgactatacaggggactcctggctagctggcccacaag 804

                                                                       
Query: 604 cttctggaatattctccagtccccatttgtcatcttgttgtaggaatgctagtgagacaa 663
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttctggaatattctccaggccccatttgtcatcttgttgtaggaatgctagtgagacaa 864

                                        
Query: 664 caggcacagcattttaaaaactgtattgt 692
           |||||||||||||||||||||||||||||
Sbjct: 865 caggcacagcattttaaaaactgtattgt 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space:   738606
Effective search space used:   738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_f09.g1 MSMg01no530_f09.g1 CHROMAT_FILE:
MSMg01no530_f09.g1 PHD_FILE: MSMg01no530_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:37 2005
         (589 letters)



>mm_chr1_157798693_157799686
          Length = 994

 Score =  996 bits (515), Expect = 0.0
 Identities = 538/547 (98%), Gaps = 5/547 (0%)
 Strand = Plus / Minus

                                                                       
Query: 48  ccatctactctggaggatgagggagggagaatgtctagggtaaggccagcccaaactgct 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 ccatctactctggaggatgagggagggagaatgtctagggtaaggccagcccaaactgct 935

                                                                       
Query: 108 gagttccagctagcctgactgcacagcacgtccctgtctcaaaatagaaagttttaaaaa 167
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 934 gagttccagctagcctgactgcacagcccgtccctgtctcaaaatagaaagttttaaaaa 875

                                                                       
Query: 168 gggacagggatgtagctcagtagtagatagcttgtctaacatactcaagtcaatgggttt 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gggacagggatgtagctcagtagtagatagcttgtctaacatactcaagtcaatgggttt 815

                                                                       
Query: 228 aattctcaatattagaaaaaccccactttcaagacaaattaatcagttcccatttaacat 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aattctcaatattagaaaaaccccactttcaagacaaattaatcagttcccatttaacat 755

                                                                       
Query: 288 aggactgcatagtattttggcattgacatggatcctgttttaatttttgacaga-ttggg 346
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 754 aggactgcatagtattttggcattgacatggatcctgttttaatttttgacagagttggg 695

                                                                       
Query: 347 ggg-gggg---agaaaagagatccaaaacctaaaatactccaaaatctgaaatatgttaa 402
           ||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gggtggggtggagaaaagagatccaaaacctaaaatactccaaaatctgaaatatgttaa 635

                                                                       
Query: 403 gagctgatagaacactgtaagtggaaagttctatatctgatctcgtgtggcaagtcatag 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gagctgatagaacactgtaagtggaaagttctatatctgatctcgtgtggcaagtcatag 575

                                                                       
Query: 463 tcaaaatgcaggtacataatattatttaatcagacgcccatgggatccaggcccagccat 522
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 574 tcaaaatgcaggtacataatattatttaatcagatgcccatgggatccaggcctagccat 515

                                                                       
Query: 523 tccccatcatcctggatatatctttgccatgcatgtccagactccccaactccgttctgc 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 514 tccccatcatcctggatatatctttgccatgcatgtccagactccccaactccgttctgt 455

                  
Query: 583 tcacagg 589
           |||||||
Sbjct: 454 tcacagg 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 994
Length adjustment: 10
Effective length of query: 579
Effective length of database: 984
Effective search space:   569736
Effective search space used:   569736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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